BAC Information

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BAC

Clone NameMSMg01-356A14
Chromosome8 (Build37)
Map Location 104,274,363 - 104,274,835
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneCdh11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-356A14.T7 (MSMg01no356_a14.b1)MSMg01-356A14.TJ (MSMg01no356_a14.g1)
ACCAG466278AG466279
length771867
length of high quality
(start - end)		518 (38 - 555)---
definitionCHROMAT_FILE: MSMg01no356_a14.b1 PHD_FILE: MSMg01no356_a14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:39 2005CHROMAT_FILE: MSMg01no356_a14.g1 PHD_FILE: MSMg01no356_a14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAA
AAGTGATCTTTAAGTCATCTCTATAAGTAAAGTACCCTGGCACTAATCAC
ACAACACAAATCACACTTTCCAAACCAGAGACCCCAGGTTTTACCTTTTC
TCATTGCAAGTAATACTTCATGAAAGTCTCCCCTTTCTTGAGTGGTTATT
TGGGGATTATGTATGTACTATTACTAAAAGGTGGTACGTTTATAATTGTC
CAGTGTGTGGAATGATACTTGGCATAGAATAATACCTAATCAAAATAGTT
TTTAAAATTCATATTTAACACACAATACAATGGGTTTCAAACTATCATTC
TAATACACATATAACATTATGATTTGTTCTTAGTTACTGCCCTCTGGACA
CTTGCCATTTTATTCAAATAGTTTTGATTGTCATCTTCCTTTTCAAAATA
GTACCCCTTTTGACTTTCTTGTCCCAAGTGTTATATTACCCTCCATTAAT
ATCCCCATTATTATCCCCCAACTCCTTTTAGAACGTTTCCTCCCATCACA
TATTCCCTTTTCTACTTGTATACCCAAAAATTGAATAGAAGATTCCCACT
GAAAGAAATATTAATGGCCCGCCCATATTTATAAAACTTCCAAAATCTTA
CCATTGTAGAAATGAACTTTCTAAAGAACTGATTCCCACACATGATTATA
AATTTTTTCGGCTTTACAACAAATTGGCGGGACTTAACAAAAACCCAGTC
CTTTCCTTACTCTTCCATTTT

GTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXATTCTCTTTAAAAAGAAAAAGCTGGAAAATTTCTCAA
CCATGTTTTTTGTTTATTTGTTTGTTTGGCTGCTTTTTTTGCCCCCTTCC
CCCCCCCCCCCTCCGCCCGCCTCCCCCCTCCCTCCTGCGGCCCCCCGCCC
CCCCCCCCCCCCCCCCCCCGCTCCCCCGCCCGCCCCCCCCTCCCCCCCCG
CCCCCCGCCGCGCCCCTCTCCTCCCCCCCCGGCCTCCCGCCCCCCGCCCC
CCCCCCGCCCCCCCTCCCCCCTCCTCCTGCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCGCCCTTTCCCCCGCTTTCTTCTCTCCTCCCCCCCCCCC
CCCCCCCCCCCCTTCTTCTTTCCCCCCTCCCCCTCCTCCCCCCCCCCCCC
CCCTCCCCCCGCCTGCCCCCCCCTCCCTCCCCCCCCCCCCCCCCCCCTCC
CCCCCTCCCTCGCCCCCCTTCCCCCCCTTCCCCCCCCCCCCCTTTCTTCA
TCCTCCGCCCCCCCCCTCCCCCCCCCCTTCCCCCCTCCCCGCCCCCCCCT
CTCCGCTTGTTTTCCCCTCTCCCCCCCCCCCCTCCCCCTCCCCCCTACTC
CCCCCCCCCTCCCCCCCCTCGCCTCCCTCCCCCCCCCCCAACCTCCCTCC
ACCATCCCGACCCAAACCCCCACACACGAACCCAACCCCCCACCCACACC
AAACTAATCCACCCAATAACCCTCCACCCTAACACACCCCACCCCACCCC
ATATCCACACCACACCTAACACCACAAAAATCACAACGCCACCCAACACA
CCCAAACCCACACCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no356_a14.b1 MSMg01no356_a14.b1 CHROMAT_FILE:
MSMg01no356_a14.b1 PHD_FILE: MSMg01no356_a14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:39 2005
         (518 letters)



>mm_chr8_104274123_104275036
          Length = 914

 Score =  812 bits (420), Expect = 0.0
 Identities = 463/478 (96%), Gaps = 6/478 (1%)
 Strand = Plus / Plus

                                                                       
Query: 41  taaagtaccctggcactaatcacacaacacaaatcacactttccaaaccagagaccccag 100
           ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||
Sbjct: 241 taaagtaccctggcactaatcacacaacacaaat--cactttccaaaccagagaccccag 298

                                                                       
Query: 101 gttttaccttttctcattgcaagtaatacttcatgaaagtctcccctttcttgagtggtt 160
           |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct: 299 gttttaccttttctcattgcaagtaatacttcatgaaa-tctccccttttttgagtggtt 357

                                                                       
Query: 161 atttggggattatgtatgtactattactaaaaggtggtacgtttataattgtccagtgtg 220
           ||||||||||||||| |||| ||||||||||||||||| |||| ||||||||||||||||
Sbjct: 358 atttggggattatgtgtgtaatattactaaaaggtggtgcgttcataattgtccagtgtg 417

                                                                       
Query: 221 tggaatgatacttggcatagaataatacctaatcaaaatagtttttaaaattcatattta 280
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 418 tggaatgatacttggcatagaataatacctaatcaagatagtttttaaaattcatattta 477

                                                                       
Query: 281 acacacaatacaatgggtttcaaactatcattctaatacacatataacattatgatttgt 340
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 478 acacacaatacaatgggtttcaaactatcattctaatacatatataacattatgatttgt 537

                                                                       
Query: 341 tcttagttactgccct-ctggacacttgccattttattcaaatagttttgattgtcatct 399
           |||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||
Sbjct: 538 tcttagttactgccctacag-acacttgccattttattcaaatagttttgattgtcatct 596

                                                                       
Query: 400 tccttttcaaaatagtaccccttttgactttcttgtcccaagtgttatattaccctccat 459
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 tccttttccaaatagtaccccttttgactttcttgtcccaagtgttatattaccctccat 656

                                                                     
Query: 460 taatatccccattattatcccccaactccttttagaacgtttcctcccatcacatatt 517
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 657 taatatccccattattatcccc-aactccttttagaacgtttcctcccatcacatatt 713


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 914
Length adjustment: 10
Effective length of query: 508
Effective length of database: 904
Effective search space:   459232
Effective search space used:   459232
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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