Query= MSMg01no356_d05.b1 MSMg01no356_d05.b1 CHROMAT_FILE:
MSMg01no356_d05.b1 PHD_FILE: MSMg01no356_d05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:51 2005
(522 letters)
>mm_chr8_110580085_110581006
Length = 922
Score = 986 bits (510), Expect = 0.0
Identities = 517/520 (99%), Gaps = 2/520 (0%)
Strand = Plus / Plus
Query: 5 gaattctctgcttccccacggaggataaagctctgccttccccctccctcccctctgcaa 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctgcttccccacggaggataaagctctgccttccccctccctcccctctgcaa 264
Query: 65 tctttctttgtgatgggcgttagagagcccagccgcctctgttctgcactgcaccgctcc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tctttctttgtgatgggcgttagagagcccagccgcctctgttctgcactgcaccgctcc 324
Query: 125 aagagcaaatttatttatatattaattttatataaaaaagatttctcatagggagccaga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aagagcaaatttatttatatattaattttatataaaaaagatttctcatagggagccaga 384
Query: 185 gattgaatcacaggcagaaacctgatttgaggttggaggcaggatggcagcaagcaaagt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gattgaatcacaggcagaaacctgatttgaggttggaggcaggatggcagcaagcaaagt 444
Query: 245 caaagaacagaggctctgaggctaggaagtaggcaggggttagaattggcttccagaaag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 caaagaacagaggctctgaggctaggaagtaggcaggggttagaattggcttccagaaag 504
Query: 305 ctccccagcacctggtctgccctcttggcacaggggcccacgtgcagtgcacagcccgag 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctccccagcacctggtctgccctcttggcacaggggcccacgtgcagtgcacagcccgag 564
Query: 365 tgttctttttccgtggttatgtaactgacaaatgaccacaaacgcagtgatttaaaac-- 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgttctttttccgtggttatgtaactgacaaatgaccacaaacgcagtgatttaaaacaa 624
Query: 423 tacctgtttcttatctcctagcctcggtaggtgtcgggggctctgctctgctggcttttc 482
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 625 tacctgtttcttatctcctagcctcggtaggtgttgggggctctgctctgctggcttttc 684
Query: 483 agctcagggtctcccagctgagatcaaggtgtgggatagg 522
||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 agctcagggtctcccagctgagatcaaggtgtgggatagg 724
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 922
Length adjustment: 10
Effective length of query: 512
Effective length of database: 912
Effective search space: 466944
Effective search space used: 466944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no356_d05.g1 MSMg01no356_d05.g1 CHROMAT_FILE:
MSMg01no356_d05.g1 PHD_FILE: MSMg01no356_d05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:51 2005
(459 letters)
>mm_chr8_110703073_110703931
Length = 859
Score = 841 bits (435), Expect = 0.0
Identities = 453/459 (98%)
Strand = Plus / Minus
Query: 1 acagtatctcaccagcatgccaggtgaaggaaggcccgtgctgttttctgagaggctgcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 acagtatctcaccagcatgccaggtgaaggaaggcccgtgctgttttctgagaggctgcc 600
Query: 61 tgtctgacctttcacctcttagtgagagtactctctcagggactgaagttggccaagctg 120
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 599 tgtctgacctttcacctcttagtgagagtactccctcagggactgaagttggccaagctg 540
Query: 121 catccttatttatccatttcccttcgaggcacttttgataatacctttaaggactacatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 catccttatttatccatttcccttcgaggcacttttgataatacctttaaggactacatg 480
Query: 181 ggattgtcattcaagactctaaaactggctacaaattaaagagaaaacactttatgagag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 ggattgtcattcaagactctaaaactggctacaaattaaagagaaaacactttatgagag 420
Query: 241 ctcagtggttagaagcagtgggtgagtaggagaggcggaggacagcagaggggaggcaga 300
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 419 ctcagcggttagaagcagtgggtgagtaggagaggcggaggacagcagagcggaggcaga 360
Query: 301 tgtttacaggaggcaccgtttggtgggaatccaagaaaggcctttaaccatctcccagca 360
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 tgtttacaggaggcaccatttggtgggaatccaagaaaggcctttaaccatctcccagca 300
Query: 361 acctgctacatctctctgtaccttggtctcttaacagaaaaagaaatatgtatcaaagta 420
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 299 acctgctacatctctctgtaccttggtcacttaacagaaaaagaaatatgtatcaaagta 240
Query: 421 gccatcttgcgggggctgtgattaataaatggatgttga 459
|||||||| ||||||||||||||||||||||||||||||
Sbjct: 239 gccatcttacgggggctgtgattaataaatggatgttga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 859
Length adjustment: 10
Effective length of query: 449
Effective length of database: 849
Effective search space: 381201
Effective search space used: 381201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
