BAC Information

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BAC

Clone NameMSMg01-356L11
Chromosome8 (Build37)
Map Location 86,510,574 - 86,510,819
singlet/doubletsinglet
Overlap genePrkaca
Upstream geneRnf150, LOC100039688, Tbc1d9, Ucp1, Elmod2, 4933434I20Rik, Clgn, Scoc, LOC546077, LOC675854, Olfr370, Ndufb7, Gpsn2, Dnajb1, Gipc1, Ptger1, Pkn1, Ddx39, Cd97, EG384857, Lphn1, Asf1b
Downstream geneSamd1, 1700067K01Rik, 2210011C24Rik, 4432412L15Rik, Il27ra, Rln3, C330011M18Rik, Rfx1, BC057552, LOC100039920, Podnl1, Cc2d1a, 4930432K21Rik, Nanos3, Zswim4, D8Ertd738e, 2410018C20Rik, Ccdc130, Cacna1a, Ier2, LOC100039975, Btbd14b, Trmt1, LOC100039997, Lyl1, Nfix, Dand5, Gadd45gip1, Rad23a, Calr, LOC546080, Farsa, Syce2, Gcdh, Klf1, Dnase2a, Mast1, Rtbdn, Rnaseh2a, LOC666841, Prdx2, Junb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-356L11.T7 (MSMg01no356_l11.b1)MSMg01-356L11.TJ (MSMg01no356_l11.g1)
ACCAG466791AG466792
length746784
length of high quality
(start - end)		564 (39 - 602)246 (71 - 316)
definitionCHROMAT_FILE: MSMg01no356_l11.b1 PHD_FILE: MSMg01no356_l11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:50:31 2005CHROMAT_FILE: MSMg01no356_l11.g1 PHD_FILE: MSMg01no356_l11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:50:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAG
GGCCTCTGGAACACATCTAGAGCTCTTAACTACTGAGCCATCTCTCTACC
AGACATGGCTATTCTAATAGTTGATAAAATATACCAAACAAAAGATAATT
AGAAGGAACAAGGAAGGTCACATCATACTCTTCAAGGAAGCAGGGCACCA
AGAGGAGGCAGAATTTCATCTATAGCCATACTCAACACAGATGGACTCAA
TGTTGAAAAACAAACGTGGCTAGATGTAGACCACAGACTACCCCCCAACA
CAGTGACAGTGGGTGGCTTCAACATGCCGCTTTCACCGACACACAGCTCA
CAAAACTGGACAAAAACGAAGGAAACACTGGAGGTAAATGATGTCATCTA
TCAAATGGACCTATAGAACATTCCACCAGAAAATACAGCTTCTTTGGGCG
AGGGAGAGATGGCTGAGTAGCCAAGATGAGGGCTAAGGGGAGGTGGCTCT
TGCAGAGGATCTGGTTCCATTGCTCAGCTCCCACCTGGTGGCTCTCCTAT
GTCCCTACATCCGGTTCATGGGATCTGACCCTCACTCTGTCCTCCCTGCT
CGCAGGCAAACAAGCCTAGATATGAGACAGATGTGAATGCACACTCTTCT
CAACAGCCTGTGGAACTTTCCCCTAAACTGATCACATATAATAAGCACAC
ACCGCACGTCTCATAAACTATAAGAAAACTGAAATGACTTCCTGTA

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAAGTTTGACCAGGAACGGGAAGTTGACGGC
CTGCAGGATGCGCTTCTCATTCAGAGTGTGCTCGATCTGCTTTAGCTTCA
CCACCTGTGGGAGAGGAGAGGAGGGAGGGAGAGAGGTCAGAGCCAGGGAT
GTGAGACTGGGGATTTCCTCAGTCAGAAGGGTGCAGATAAGCACAGTGTG
GCTGAGGGCTGACAGTCGAGGGTCCACACAGATCAGAGCAGACCATGTAG
GCACAGAAGCCCCTTATACCTTATGTTCAGCACGTAGGGGAGGAGCCTGG
GAGCTACAGATGCCCAGATGAGGCACCTGGCACAATCTGGCAAGTAGAGA
AGGCTGCCTGCCCGAGAAGGAGACTCTTCTGACACTAGAGAGGCCCCCAA
AGGCATGGAGACTTAGAAATCCGCTTCCCTTTTTCTAGGCACGTCCTTTG
CCCTGTGCGGGCCCGAGCCTTTACCCCTCTACCCTTCATGTGCCCACCCC
CTCTTTTCTCTTTACGCTATTTCCCTGCCTTTCCATCCCTCGTCTTTTTC
TCTTCTTCCCTTCCCATTTCCTTTCCCCCTTTTCCCCTCCTCCTTTTTTC
CCCCCTTTTCTCCTCCCTTTTCCCACCCCTTTTCTGCCTTTCCCTTTCCA
TTTTTTTCTCCTTCCTATGCCTTTACCCTCTTTTCCCTCTTTTTTTTCCG
GCTCCCCCCCCTATCTCTATTCTATTCAGTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no356_l11.g1 MSMg01no356_l11.g1 CHROMAT_FILE:
MSMg01no356_l11.g1 PHD_FILE: MSMg01no356_l11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:31 2005
         (246 letters)



>mm_chr8_86510374_86511019
          Length = 646

 Score =  476 bits (246), Expect = e-139
 Identities = 246/246 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagtttgaccaggaacgggaagttgacggcctgcaggatgcgcttctcattcagagtgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 aagtttgaccaggaacgggaagttgacggcctgcaggatgcgcttctcattcagagtgtg 387

                                                                       
Query: 61  ctcgatctgctttagcttcaccacctgtgggagaggagaggagggagggagagaggtcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ctcgatctgctttagcttcaccacctgtgggagaggagaggagggagggagagaggtcag 327

                                                                       
Query: 121 agccagggatgtgagactggggatttcctcagtcagaagggtgcagataagcacagtgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 agccagggatgtgagactggggatttcctcagtcagaagggtgcagataagcacagtgtg 267

                                                                       
Query: 181 gctgagggctgacagtcgagggtccacacagatcagagcagaccatgtaggcacagaagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gctgagggctgacagtcgagggtccacacagatcagagcagaccatgtaggcacagaagc 207

                 
Query: 241 ccctta 246
           ||||||
Sbjct: 206 ccctta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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