BAC Information

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BAC

Clone NameMSMg01-356N12
Chromosome8 (Build37)
Map Location 62,549,264 - 62,549,775
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665116, LOC436042
Downstream geneAadat, Mfap3l, LOC100040679, 2700029M09Rik, Clcn3, B230317F23Rik, Nek1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-356N12.T7 (MSMg01no356_n12.b1)MSMg01-356N12.TJ (MSMg01no356_n12.g1)
ACCAG466889AG466890
length7321,617
length of high quality
(start - end)		492 (63 - 554)---
definitionCHROMAT_FILE: MSMg01no356_n12.b1 PHD_FILE: MSMg01no356_n12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:50:41 2005CHROMAT_FILE: MSMg01no356_n12.g1 PHD_FILE: MSMg01no356_n12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:50:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCATCTGTTCCATCTTTGCAGAAGACTTCTATTTACTGCCTTCCAATG
TAGTAATGTTTTTCTTCCTTTTAAAATCAGATTGAGGATAATTTCATGAA
AGCATGGGAAAGAATTTGGAGGAGGAAGGCATGGAATTAAAGAATCAGGG
AGGTAGTGGGCAAATTTTCATGCTCTGGCTTTTTCAGGAGAGTTGGATTT
TTCACGATGCTAGCCATCCGTGAAAAATCCTGCCATCCCATCAGGAACAA
ATAACAGCTGTATGCTCTCCCCCATCTGGCAGCTACTTTCACACACACAC
ACACACACACACACACACATACACACACACACACACCACAAACACACCAC
AGTCATATTATTTCCTCATCTGCCAGTTTCTCTCTCCATTCAGTGCCATT
TCTTTCCTTAAGCACTCACGGGGAAGTACAGAAAAAGCCAAAATTAGTTT
TAGACCAGGATAGCTCTACTTTGCAGTCATAATGCCCAAGTTAACAAGAG
TCCTGCTTATTCTGGAATAAAACCTACCATAAACAAAATTTACGCTTGGT
CTTTCATGTCTGTCTACCCTGGAAATTTTATAAACCTATTGATGGGCTAT
ATTTCATAAACCTCATTTAACCTCTCCTCCGGTGTATAAACTACTCCCAC
TCTGAGAAGTGATTTCTAATTCCAGCTTTCTT

TTGAGGTTGAGATGCGCGAGGGGTTNGTGGTATCGAGATCGATAGTTGGG
CGAAGTCTGATGGCGCCGCGACTGTCTAGATCTACACTAGTAAGAGCGAG
AGCGGTATTAGTAGGACGTCCAGACGCGTGAGTGGTAGTGGCCCGTACCA
TGCGACCTCGCCCCGCCACGATGTGTCANTGCCAGCTCCACGGCTACTAG
TTATAGTGTATACCTGGTAGTGTCACATTCTCATTTATATGTGTACTATG
ATGCATGCGTTACGCCGTGTATGCGTACGAAGCGGCGGGTGCGCTCGACT
ATGGTGATTGCGNTAAACGCCGTCCGACTACGGTTGGCCTATCAATTAGC
GAGCTCGTCTATAACTAACAGGCGCCANTACAGTGACGCGCCTCGCACGC
GGCCGAGTCACCGACGATCACTTGCATCGCCAATGTTGTATCCTCATATG
GTCGCCCGTGTATTGTGCGCGTTGATCATTGCCGTCGTGCATTACCTAGA
TCGCTATAGATAATTGTTATAAGGACGGATACGAGGAGAGTAATAATTGC
TTACTGTGTAATTGCAGAACAGTTTGACTCACTACATTTGCGCNTACATT
ATAGTGTAAGGACAGCGTGGACGTAGAGAGTCAGGATAACCTGTTACATT
ACACCGCGGATCGCCTTAAGCGACGCCAGGTGTATGAACAGTTAATAATA
TATGCGCAGAATATTTATTTTTCCGTCGTACCTTTGTGCGATTATCATTT
ATCCTCATCTCTTATCCCTCTCTTGTGATACCGTGGATGTCTATATCCAG
TCATGTGGTGTTGTACCCTGTCGTTAATGAGGTCTAGCCCTATATATAGC
CCACCTCGTTTGACACGTCCTTGGTGTTCTCACCTGTCGTGATCTGCCGC
GCTGTACCCTTCCTGCACTTGTATAGTTGACTCCAAACGCGTATCAAATT
AAAACACGCACACAGTTGCGCATATGACAATATATCAAGATAATATCACG
CCCGACGAATATATGAGAAATCGCGCCATATCGCTGATCGCCCCGCTCTG
CTGTATGTNGTTAGAAGTTATTCACATAACTACGACATACCTCATGTTCG
ATCCATATGCGAGGTTGGAGCTGCTCGTGCATCCGAGACACTCTATAATC
GAGACGTATGACACTCAACGATGAGAGTAATGCGTTGTTATATTGTATAT
NTATCACGATGATATGCCANGATCGACGTGCGTGGCATAATACCACACCA
CAGTGCAGCCGATTATATGACGCTTATACAGACGCANTGACTCCTCTAAC
AGCTTATCGCACATGCGTATATTTCCTACATCGTTGTTGTAGGACACGTG
GTATACACCTGGAGACACATCAGTCATAGCCNTATGTACTACCATCGCCC
CACATCTGNCACATGTGTACGAGGACANGCGNTNTAATGTGGTGGAGCGC
GAGATGGAATGTGTCCGGAAGCTCTGTTACAGCCCGTGGTTGAGAGAACT
ATGTACGCCACTTTNGTGTCATGCTCGNCAACGCGCGAGACACTCTTTTA
CACGTATATATATGCGTCTACTACGCACGTCGTCGATGGTCGATCCGACA
TCTACTATATGTCTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no356_n12.b1 MSMg01no356_n12.b1 CHROMAT_FILE:
MSMg01no356_n12.b1 PHD_FILE: MSMg01no356_n12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:41 2005
         (492 letters)



>mm_chr8_62549084_62549975
          Length = 892

 Score =  893 bits (462), Expect = 0.0
 Identities = 490/512 (95%), Gaps = 20/512 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   catctttgcagaagacttctatttactgccttccaatgtagtaatgtttttcttcctttt 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 181 catctttgcagaagacttctatttactgacttccaatgtagtaatgtttttcttcctttt 240

                                                                       
Query: 61  aaaatcagattgaggataatttcatgaaagcatgggaaagaatttggaggaggaaggcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aaaatcagattgaggataatttcatgaaagcatgggaaagaatttggaggaggaaggcat 300

                                                                       
Query: 121 ggaattaaagaatcagggaggtagtgggcaaattttcatgctctggctttttcaggagag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ggaattaaagaatcagggaggtagtgggcaaattttcatgctctggctttttcaggagag 360

                                                                       
Query: 181 ttggatttttcacgatgctagccatccgtgaaaaatcctgccatcccatcaggaacaaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ttggatttttcacgatgctagccatccgtgaaaaatcctgccatcccatcaggaacaaat 420

                                                                       
Query: 241 aacagctgtatgctctcccccatctggcagctactttcacacacacacacacacacacac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aacagctgtatgctctcccccatctggcagctactttcacacacacacacacacacacac 480

                                                                       
Query: 301 acacaca--------------------tacacacacacacacaccacaaacacaccacag 340
           |||||||                    |||||||||||||||||||||||||||||||||
Sbjct: 481 acacacacacacacacacacacacacatacacacacacacacaccacaaacacaccacag 540

                                                                       
Query: 341 tcatattatttcctcatctgccagtttctctctccattcagtgccatttctttccttaag 400
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tcatattatttcctcatctgccagtttctctctccattcagtgccatttctttccttaag 600

                                                                       
Query: 401 cactcacggggaagtacagaaaaagccaaaattagttttagaccaggatagctctacttt 460
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 cactcatggggaagtacagaaaaagccaaaattagttttagaccaggatagctctacttt 660

                                           
Query: 461 gcagtcataatgcccaagttaacaagagtcct 492
           ||||||||||||||||||||||||||||||||
Sbjct: 661 gcagtcataatgcccaagttaacaagagtcct 692


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 54
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space:   425124
Effective search space used:   425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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