BAC Information

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BAC

Clone NameMSMg01-357I13
Chromosome8 (Build37)
Map Location 52,934,197 - 52,934,723
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667517
Downstream geneLOC623872, LOC100040220, LOC623935, 1190028D05Rik, LOC676688
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-357I13.T7 (MSMg01no357_i13.b1)MSMg01-357I13.TJ (MSMg01no357_i13.g1)
ACCAG467411AG467412
length748825
length of high quality
(start - end)
527 (67 - 593)177 (73 - 249)
definitionCHROMAT_FILE: MSMg01no357_i13.b1 PHD_FILE: MSMg01no357_i13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:33 2005CHROMAT_FILE: MSMg01no357_i13.g1 PHD_FILE: MSMg01no357_i13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCCCTGTTCTCGCAGGCAGATAAAGTTTGGCAACCAATGGGCCTCTCTTT
CCACTGATGGCCAACTAGGCCATCTTCTGCTACATATGCAGCTAGAAACA
TGAGCTCTGCGTACTCACTTCTAAAAGGTCAAACATAATAAGAGAGAACA
TATGATAGTTATCTCTGGGTCTAAATTACTTCACTTAAAATATTTTTTTA
ATTCCATCTATTTTCCTGAAATTTTTATGATTTCTTTTTTCTTACACCTG
AGTATAATTCCTTTACTTATCTATACCGTGTGTTAGTTATCCATATACAG
TGTGTTAGTTATCCACCTAACGTTGAAAAACATTTCCTATGTTTCTGTTT
CCTACCTATTGTGAACACAGAGGTGACAGACACTTTGCTGACAAAATACC
TTTGGCATAGCCTATCCAGTCCTTTGTGTGTGTAGTTAGGAGTGGTACAC
CTAGGTCATATGGTAGATATGTTGTTAAACTATTTGTCACACTGATTACC
CAAGGAGGTGCACCCATATGCAGTTTACCAACACTGAATGAGGGTCGCTG
CCTCTCCACACCTCTTCTCGTGTTTGTTGATCCTTGGTGTTTATAATTTT
GCCCCCCTTACTATGAAAAGAATAAGTCTCCAAGAAACTTTTAATTTGGC
TTTTGCCTAACTACCTGATGCGCTTTGAAAACTTTTTTTCCCCACTTG
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCATGACATCTAAAACACTGGAACACCAA
ACAGACAGTGTACGCCAGCTGATATGAGGCCCCCAACACACATACAGTAG
AGGACTTCCGGATCTATGTTCATTCAGTGATGATGCACCTAACCCTCAAG
AGACTGGAGGCCCTAGGGAGTTTAGAGGTAAGGTGGGGTAGAGGTGTTGN
NTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNCNNNNCNNNNNNNCCTCTTTTTTTCCCCTCTCTTCCCCTCCCCTTTTT
TTTTTCTCCTCTTTCTCCTTTCTCTTTTTTCCTTCCCTTTTCTCTTTCCC
TCCCCTTTTCCTCTTTCCCTCCCCTTTCTTCTTTCTTCTCTCCCTTCTTT
TCCTTTTCTTCCCTCTCTTCTCTCCTTCTCCCCTCCTCTTCTCTCTCTTC
TCCTCTTTCCCTTTTCTTTTCTTCCTCTTCCTCTCTTTTTCTTCTTTCTC
CTTTTTCTTCTCCTTTCTTTTCTCCTTTCCTCCTTCCTTTCTTTTCTCCC
TTTCTTCCCTTTCTCTTTTTCTTTTTTCTTCTCCCTCCTTCTTTTCTTCT
CTCCTTTTCCTTTTCCTCTTCCCTCTTTTCTTTTCCTCTTCTTTCTTTTC
CCCTTTCTCTTTTCTTTTCCTTTTTCTTTTCCCCTTCCTCCTTTCCTCTT
TCTTCTCCCCCTTCTTTTCCCCCTTTTCTCTTCTTCCCCTTTCCTCTCCC
CCTCTTTCTCCTTCTCCCCTTCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no357_i13.b1 MSMg01no357_i13.b1 CHROMAT_FILE:
MSMg01no357_i13.b1 PHD_FILE: MSMg01no357_i13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:33 2005
         (527 letters)



>mm_chr8_52933997_52934923
          Length = 927

 Score =  951 bits (492), Expect = 0.0
 Identities = 519/528 (98%), Gaps = 2/528 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagataaagtttggcaaccaatgggcctctctttccactgatggccaactaggccatctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagataaagtttggcaaccaatgggcctctctttccactgatggccaactaggccatctt 260

                                                                       
Query: 61  ctgctacatatgcagctagaaacatgagctctgcgtactcacttctaaaaggtcaaacat 120
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgctacatatgcagctagagacatgagctctgcgtactcacttctaaaaggtcaaacat 320

                                                                       
Query: 121 aataagagagaacatatgatagttatctctgggtctaaattacttcacttaaaatatttt 180
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 321 aataagagagaacatatgatagttatctctgggtctaaattacttcacataaaatatttt 380

                                                                       
Query: 181 tttaattccatctattttcctgaaatttttatgatttcttttttcttacacctgagtata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttaattccatctattttcctgaaatttttatgatttcttttttcttacacctgagtata 440

                                                                       
Query: 241 attcctttacttatctataccgtgtgttagttatccatatac-agtgtgttagttatcca 299
           |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 441 attcctttacttatctataccgtgtgttagttatccatatacca-tgtgttagttatcca 499

                                                                       
Query: 300 cctaacgttgaaaaacatttcctatgtttctgtttcctacctattgtgaacacagaggtg 359
           ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 500 cctaacgttgaaagacatttcctatgtttctgtttcctacctattatgaacacagaggtg 559

                                                                       
Query: 360 acagacactttgctgacaaaatacctttggcatagcctatccagtcctttgtgtgtgtag 419
           ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 560 acagacactttgctgacaaaatatctttggcatagtctatccagtcctttgtgtgtgtag 619

                                                                       
Query: 420 ttaggagtggtacacctaggtcatatggtagatatgttgttaaactatttgtcacactga 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ttaggagtggtacacctaggtcatatggtagatatgttgttaaactatttgtcacactga 679

                                                           
Query: 480 ttacccaaggaggtgcacccatatgcagtttaccaacactgaatgagg 527
           |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 680 ttacccaaggaggtgcacccatatgcagcttaccaacactgaatgagg 727


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space:   474089
Effective search space used:   474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)