BAC Information

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BAC

Clone NameMSMg01-358I17
Chromosome8 (Build37)
Map Location 32,986,305 - 33,164,785
singlet/doubletdoublet
Overlap geneNrg1
Upstream geneLOC547008, Dusp26, Rnf122, BC019943, Rbm13, Fut10, LOC666330, LOC666568, 7420700N18Rik, LOC100041329, EG330731, LOC100041340
Downstream gene2010007E15Rik, EG666589, EG546052, LOC100042715, LOC628408
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-358I17.T7 (MSMg01no358_i17.b1)MSMg01-358I17.TJ (MSMg01no358_i17.g1)
ACCAG468175AG468176
length709716
length of high quality
(start - end)		498 (44 - 541)443 (70 - 512)
definitionCHROMAT_FILE: MSMg01no358_i17.b1 PHD_FILE: MSMg01no358_i17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:52:50 2005CHROMAT_FILE: MSMg01no358_i17.g1 PHD_FILE: MSMg01no358_i17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:52:50 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,986,305 - 32,986,799)(33,164,343 - 33,164,785)
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCACCTTTGGTTTCTAGCCCCAACATTAAAGGATGTCCACATGTGATTA
AGTTCAAAGATGGTCTATACACCCAGACAACTGTCACTGTTCTATTAAAT
CAGATTCGGTTCCCTCCAACTGCATTCATCACTAAGTCAGGCAAGCTGCT
TAACTAATTAGCATCTGGGCCCCAGAACTGCACTAATTCACTGATTCAAT
TTTTGTGTCACTGCAGGCAAACCGAACCCCTCAATCACTGTCAGCTACAG
ACTAGGAGGAAGTCAAGAAGTTTCATTTTTAATGATTACTTAATTTGAGT
TATAGCTGTATGGCAGTCTTATGCACGCAATATTGTCCATCCATGATTTC
AACTGGTTGAACACAAAACCAAGGCAGATCAGACAAACACAGCACAAGCT
CACTGCCAGCATACAGAGAACGCATACCACCCCTAAAGGCAGAATAATTA
CGGGTCAGTTTTTGGTTCTGTGTCACTGGAAGCATCTATGGTAACTGTAG
AGTTCCTTTCTGGGGAAGTTTCTGCTTTATCTGTGAGTGGAGAAAGGGAA
TGTTGTATTTCCTTATGGGCTCTCTTTGGAGGAAGGGGCTAAACTCTGTG
CTTTCTAAAATCCCCACTTGCCTAAAAAGTATTGTTGGATGTAAAACTCA
AAACCCCCG

GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAAAACGTGTATGGGTGACACAATTTTTTTTA
AGTTAATAAAATAAGCTATAGACAGAGTGCTAATGAAAATAGCTTTGCAT
CCAAACAGAGACCTTAATGACCTTGGTTCTCTGCACCATTTCTGAAAGTT
TTTGCAAATGATTTCCAGTGTGTCCTTACTTTCTTTCCCAGTTGGGGGTA
ATTAAGAGTCTTTCTCTGTGCTAAATTAGGAGCTGCAGAAACAAGAAAGC
TTCAAGCTTCCATTGTGGGCAGAGCCTCTTTTCTTGTTCACCCTGTTCAA
AGAATCTCCTAAGACAGCTGACTAGTGACTCGGGGCCAGTAGGACAAGAG
CTAAGTGCAAGGCCCCTCGTCTCACACAGAGGGAAAGCTGTGGATTAAAG
GATTCTTACTTAATAGGTCCCTAAGAGAATCCTTTTCCTTACAGTCATTT
ACCACCCCCAGAAAATAACTAACTCTAAATGGCCCTNACCAACATCCATT
TTTAAAGTACTTATAGCTCAGTTCTTTCTTTGTTTAAGGTAAAAAACCAG
GAGAACATCTGTTTGTCCAAAAAGAAACCTACTTCGCCTAAAATCTTAAT
TGAAAACCCCAAAAAAAAAAGGGAAAGGTTTTTTCAGGGACACCATCCCC
CCTTTTTTAAAGTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no358_i17.b1 MSMg01no358_i17.b1 CHROMAT_FILE:
MSMg01no358_i17.b1 PHD_FILE: MSMg01no358_i17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:52:50 2005
         (498 letters)



>mm_chr8_32986102_32986999
          Length = 898

 Score =  957 bits (495), Expect = 0.0
 Identities = 495/495 (100%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcacctttggtttctagccccaacattaaaggatgtccacatgtgattaagttca 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcacctttggtttctagccccaacattaaaggatgtccacatgtgattaagttca 263

                                                                       
Query: 64  aagatggtctatacacccagacaactgtcactgttctattaaatcagattcggttccctc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aagatggtctatacacccagacaactgtcactgttctattaaatcagattcggttccctc 323

                                                                       
Query: 124 caactgcattcatcactaagtcaggcaagctgcttaactaattagcatctgggccccaga 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 caactgcattcatcactaagtcaggcaagctgcttaactaattagcatctgggccccaga 383

                                                                       
Query: 184 actgcactaattcactgattcaatttttgtgtcactgcaggcaaaccgaacccctcaatc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 actgcactaattcactgattcaatttttgtgtcactgcaggcaaaccgaacccctcaatc 443

                                                                       
Query: 244 actgtcagctacagactaggaggaagtcaagaagtttcatttttaatgattacttaattt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 actgtcagctacagactaggaggaagtcaagaagtttcatttttaatgattacttaattt 503

                                                                       
Query: 304 gagttatagctgtatggcagtcttatgcacgcaatattgtccatccatgatttcaactgg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gagttatagctgtatggcagtcttatgcacgcaatattgtccatccatgatttcaactgg 563

                                                                       
Query: 364 ttgaacacaaaaccaaggcagatcagacaaacacagcacaagctcactgccagcatacag 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ttgaacacaaaaccaaggcagatcagacaaacacagcacaagctcactgccagcatacag 623

                                                                       
Query: 424 agaacgcataccacccctaaaggcagaataattacgggtcagtttttggttctgtgtcac 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 agaacgcataccacccctaaaggcagaataattacgggtcagtttttggttctgtgtcac 683

                          
Query: 484 tggaagcatctatgg 498
           |||||||||||||||
Sbjct: 684 tggaagcatctatgg 698


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 898
Length adjustment: 10
Effective length of query: 488
Effective length of database: 888
Effective search space:   433344
Effective search space used:   433344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no358_i17.g1 MSMg01no358_i17.g1 CHROMAT_FILE:
MSMg01no358_i17.g1 PHD_FILE: MSMg01no358_i17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:52:50 2005
         (443 letters)



>mm_chr8_33164143_33164985
          Length = 843

 Score =  857 bits (443), Expect = 0.0
 Identities = 443/443 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaacgtgtatgggtgacacaattttttttaagttaataaaataagctatagacagagtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 aaaacgtgtatgggtgacacaattttttttaagttaataaaataagctatagacagagtg 584

                                                                       
Query: 61  ctaatgaaaatagctttgcatccaaacagagaccttaatgaccttggttctctgcaccat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 ctaatgaaaatagctttgcatccaaacagagaccttaatgaccttggttctctgcaccat 524

                                                                       
Query: 121 ttctgaaagtttttgcaaatgatttccagtgtgtccttactttctttcccagttgggggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 ttctgaaagtttttgcaaatgatttccagtgtgtccttactttctttcccagttgggggt 464

                                                                       
Query: 181 aattaagagtctttctctgtgctaaattaggagctgcagaaacaagaaagcttcaagctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 aattaagagtctttctctgtgctaaattaggagctgcagaaacaagaaagcttcaagctt 404

                                                                       
Query: 241 ccattgtgggcagagcctcttttcttgttcaccctgttcaaagaatctcctaagacagct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 ccattgtgggcagagcctcttttcttgttcaccctgttcaaagaatctcctaagacagct 344

                                                                       
Query: 301 gactagtgactcggggccagtaggacaagagctaagtgcaaggcccctcgtctcacacag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 gactagtgactcggggccagtaggacaagagctaagtgcaaggcccctcgtctcacacag 284

                                                                       
Query: 361 agggaaagctgtggattaaaggattcttacttaataggtccctaagagaatccttttcct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 agggaaagctgtggattaaaggattcttacttaataggtccctaagagaatccttttcct 224

                                  
Query: 421 tacagtcatttaccacccccaga 443
           |||||||||||||||||||||||
Sbjct: 223 tacagtcatttaccacccccaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 443
Length of database: 843
Length adjustment: 10
Effective length of query: 433
Effective length of database: 833
Effective search space:   360689
Effective search space used:   360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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