Query= MSMg01no359_a21.b1 MSMg01no359_a21.b1 CHROMAT_FILE:
MSMg01no359_a21.b1 PHD_FILE: MSMg01no359_a21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:28 2005
(478 letters)
>mm_chr8_108075349_108076226
Length = 878
Score = 841 bits (435), Expect = 0.0
Identities = 464/479 (96%), Gaps = 10/479 (2%)
Strand = Plus / Plus
Query: 6 ggaattcactttgtatactaggatggcctcaaactcagaaatcctcctgcctctgcctcc 65
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcactttgtagactaggatggcctcaaactcagaaatcctcctgcctctgcctcc 263
Query: 66 caagtgctgggattaaaggtgtgcgccaccacgcccagctccttcataatttaaaaggta 125
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 264 caagtgctgggattaaaggtgtgcaccaccacgcccagctccttcataatttaaaaggta 323
Query: 126 gattcaatggctcgacagttaaaaacattgctgatcttacagaaaagttaggttcccagc 185
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 324 gattcaatggctcgacagttaaaaacattgctgatcttacagaaaagttaggtttccagc 383
Query: 186 atccacatcatgtggatgttactataactccagctgctgggggacctgactcctctgcac 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 atccacatcatgtggatgttactataactccagctgctgggggacctgactcctctgcac 443
Query: 246 tccatgaatacctcaacatacatgcatagacactcctacacacactcacacacagacaca 305
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct: 444 tccatgaatacctcaacatacatgcatagacactcctacacacactcacacagagagaca 503
Query: 306 cacacacacagagacacacattctcattttct------aacaaaatgaaacaaaagttag 359
|||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 504 cacaca----gagacacacattctcattttctctctctaacaaaatgaaacaaaagttag 559
Query: 360 atccacatgatggaagccactataaagacgtgagaagcaaactgtcttggcaatgacggg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 atccacatgatggaagccactataaagacgtgagaagcaaactgtcttggcaatgacggg 619
Query: 420 aagaccttcctactctctgttcccaccaggtctggccatgtggaacatagtttgaaatt 478
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aagaccttcctactctctgttcccaccaggtctggccatgtggaacatagtttgaaatt 678
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 878
Length adjustment: 10
Effective length of query: 468
Effective length of database: 868
Effective search space: 406224
Effective search space used: 406224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no359_a21.g1 MSMg01no359_a21.g1 CHROMAT_FILE:
MSMg01no359_a21.g1 PHD_FILE: MSMg01no359_a21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:28 2005
(342 letters)
>mm_chr8_108248786_108249527
Length = 742
Score = 623 bits (322), Expect = 0.0
Identities = 337/342 (98%)
Strand = Plus / Minus
Query: 1 aactgactcctcaaagttttcctttgaatctgaggccccttggagcatagaggtataact 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 542 aactgactcctcaaagttttcctttgaatctgaggccccttagagcatagaggtataact 483
Query: 61 caggggtagatagagttagtgtgcatgaggctttgaggtccgtccccagtgccccaaaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 caggggtagatagagttagtgtgcatgaggctttgaggtccgtccccagtgccccaaaca 423
Query: 121 aaagacagaaatggagctgaggcccaggaatttaagatacaataacttcataacttaggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 aaagacagaaatggagctgaggcccaggaatttaagatacaataacttcataacttaggt 363
Query: 181 cttgggatgtaggcaaaattgcttttcctttttgttagagtattttcttgatcttatgtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 cttgggatgtaggcaaaattgcttttcctttttgttagagtattttcttgatcttatgtt 303
Query: 241 tgtagtatgcatttgtacatattctgtgtaggaatgtatgtacctttcataatacatatg 300
|||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct: 302 tgtagtatgcgtttgtacatattctgtgtaggaatgtatgtaactttcatgatacatatg 243
Query: 301 agggctagaggttgatattgggtaattttatttctaattttg 342
| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 aaggctagaggttgatattgggtaattttatttctaattttg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 742
Length adjustment: 9
Effective length of query: 333
Effective length of database: 733
Effective search space: 244089
Effective search space used: 244089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
