GCXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTACTGAAGCTA
TGCATATGTATTGCATAGAAGAAAGGCTGGCCTGGGCAGTGGTGGCTCAT
GCCTTTAGTTCCAGCACTTAGGAGGCATGGGCTGATGGATCTCTGTGAGT
TCAGGGTTAGGCTGAGCTACAGAGTGAAATTCAGGATAGCCAGAGCTACA
CAGAGAAACCCTGTCTGAAAAAAACAAACCAACCCCCTCCTCAAAAACAG
ATTAATTTTTTAAAAGGTTTTTTAAAATATGGAATAGCTCTAGCAGCACA
GCACAAACATTGCCACAAAGACTTGCAGAAACCTGTGTGTTGAAACCTGC
AGGAACCATTCTCTTTCTTTGTTGTAATAAAGCTAAGTCTGGGGCCACAG
AACATAGGAGGTGAAAGCTGCAGGATCAGAAGTTCAAGGTCAGCCTCAAC
TTCAGGAGATCCTGTCTTGAAAAAAAATAGTAGATAAAATAAATGTAATA
TATTTTAATTTATCTCCTGTTTTCTAGAGAAATTCTCACCATGTACCTCA
GAGTCTTTTTGGAACTGGNCCATTGTAGGGCAGACTAAACACAATCCCTC
CTGTCCCCACCTTCCTAAGTGCTGAGAATCTAAGCCTGGACTACTCCTGG
CTTACCCCTAAAATTAAGAAAGGGGTTTTCGGTTTGTAACTATCTTAAAA
AACATTTCTTTTCTCCCGGAATCCATTGAAATTTAAATTTTTTTGAAAAA
AAAACTTTTATTAATTTTTTTN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXATTAACTTGGATGACTCAGAGACCTAGGGTAGATCCAAACAC
GAACAACAAAAAAAAAAAAAAAAAAAGTCAATGGAATGGTTTCTAATGAT
GTTCTTCTATACTCATAGTTCAGGGCTTAGCCCAGTCATCATCAGAGAGA
CTTCTTCCAGCAAGTGAAGGGAGAGGATGCAAAGATCCACACCCAAACAC
TAAGCAGAGCTCTATGAACTCTTTGGTGGGGATGGGGTTGGGNACAGNAN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

Query= MSMg01no359_e08.b1 MSMg01no359_e08.b1 CHROMAT_FILE:
MSMg01no359_e08.b1 PHD_FILE: MSMg01no359_e08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:44 2005
         (491 letters)



>mm_chr8_55274828_55275720
          Length = 893

 Score =  847 bits (438), Expect = 0.0
 Identities = 472/484 (97%), Gaps = 3/484 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctactgaagctatgcatatgtattgcatagaagaaaggctggcctgggcagtggt 64
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 764 gaattctactgaagctatgcatatgtatagcatagaagaaaggctggcctgggcagtggt 705

                                                                       
Query: 65  ggctcatgcctttagttccagcacttaggaggcatgggctgatggatctctgtgagttca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 ggctcatgcctttagttccagcacttaggaggcatgggctgatggatctctgtgagttca 645

                                                                       
Query: 125 gggttaggctgagctacagagtgaaattcaggatagccagagctacacagagaaaccctg 184
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 644 gggttaggctgagctacagagtgagattcaggatagccagagctacacagagaaaccctg 585

                                                                       
Query: 185 tctgaaaaaaacaaaccaaccccctcctcaaaaacagattaatttttt--aaaaggtttt 242
           |||| ||||||||||||||||||||||||||||||||||| |||||||  ||||||||||
Sbjct: 584 tctg-aaaaaacaaaccaaccccctcctcaaaaacagattgatttttttaaaaaggtttt 526

                                                                       
Query: 243 ttaaaatatggaatagctctagcagcacagcacaaacattgccacaaagacttgcagaaa 302
           | |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| 
Sbjct: 525 taaaaatatggaatagctctagcagcacagcaaaaacattgccacaaagacctgcagaag 466

                                                                       
Query: 303 cctgtgtgttgaaacctgcaggaaccattctctttctttgttgtaataaagctaagtctg 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 cctgtgtgttgaaacctgcaggaaccattctctttctttgttgtaataaagctaagtctg 406

                                                                       
Query: 363 gggccacagaacataggaggtgaaagctgcaggatcagaagttcaaggtcagcctcaact 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 gggccacagaacataggaggtgaaagctgcaggatcagaagttcaaggtcagcctcaact 346

                                                                       
Query: 423 tcaggagatcctgtcttgaaaaaaaatagtagataaaataaatgtaatatattttaattt 482
           ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 345 tcaggagatcctgccttgaaaaaaaatagtagataaaataaaagtaatatattttaattt 286

               
Query: 483 atct 486
           ||||
Sbjct: 285 atct 282


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 893
Length adjustment: 10
Effective length of query: 481
Effective length of database: 883
Effective search space:   424723
Effective search space used:   424723
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)