BAC Information

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BAC

Clone NameMSMg01-359H04
Chromosome8 (Build37)
Map Location 94,326,701 - 94,507,651
singlet/doubletdoublet
Overlap genenone
Upstream geneChd9, LOC100041156, EG626231, Rbl2, Aktip, LOC667162, LOC100041222, Rpgrip1l, AJ237917, LOC100041254, LOC674324, LOC100040628, Irx3
Downstream gene4933436C20Rik, Irx5, Irx6, LOC100041325, Mmp2, Aytl1, Capns2, LOC100040752, Slc6a2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-359H04.T7 (MSMg01no359_h04.b1)MSMg01-359H04.TJ (MSMg01no359_h04.g1)
ACCAG468860AG468861
length765761
length of high quality
(start - end)
294 (31 - 324)357 (59 - 415)
definitionCHROMAT_FILE: MSMg01no359_h04.b1 PHD_FILE: MSMg01no359_h04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:56 2005CHROMAT_FILE: MSMg01no359_h04.g1 PHD_FILE: MSMg01no359_h04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:56 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,326,701 - 94,326,990)(94,507,295 - 94,507,651)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCCCCAGAGCC
GTAGAGAGTGTGCATTGTGGGGGCGGGGAGCAAGACTTTGGTTTTATGGT
AGGATATTTCCTAAATCTAACTTGAAATGTGAGTGTCCAAGTGCCCACCG
TCACGGATTAGTGTGTGCAGTGGAAAGTCATACTGAAATTCCCGGGATAG
CTGGAGCTCCCAGATAAGGCTGTAGCGGCGACCCACGCGCGGGCCAGGCC
TGCTGTGGGCCTGCGGACTGAACAACTCCCCGGCTGCGATTCTTCATTAG
AGTGAAGAGCCCTAGCTTATAGGCAGAAAAACCACCCCAAGGGCCTCCGA
CTGAACTAAGAATCTCACCGGAACTCGCCAGCTTGGAGGAATCTAAGGGT
CCCGGGCTGGTTCGGGCTCCAGCGTGAAAACAGTTAGTTAATGGATTTCT
TTTCTTTCTGTCCCTGCTCTTCTTTTTTGATCCCCCCGTCTTCCCTTTGT
TTTTCTTTCTCTTTATTTCAGTCTTCCCTACCTATCGCCTTTTTTGCTTT
CCTTTTCCCCTCTACGCATTTTAGCCTTCTTGCCCTCGCACCCGTATTTT
TCCCCCGAACACATTTATCTCGCACCCCCGCCCCCATTTTCATTTTTTTT
TCCTTTTACTCTTTTTCCTCTCTTGTCTTTCTCTTTCTCCTTTCTCTGCA
TTTTTCTTTTTCCTCCCCGTTTTTTGATACCCTCCCCCCTCTTCTCAGTC
CTTTTTTCCCGCCCN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXCCCTAAGGGCACAGGCCACATCAGAACTGGCACTGAGCCAAG
TGTCATCATGTCACTAGCAGATTTCCTGTTTGAAACTGTTTTCTTATTTT
CAGGTCAGGTTCTTGAACAGGGCTTACCAGACCACAGAGCAAGGGCCCTT
GTACTTATGTGCCCCCTCCTCATCTCCCCTTCTGGTCCCTGTCCTCTGTC
CTCACTGCCACCCTCTAGATCATCATGTCCCATACCAAGTTATGGACATC
CTTTTGCCACAAAGTCTCATACATCCAAATGTATTCAATGAAGCTATCTG
TACATAACAGCCCCCAAATAATTCTGGCTTTGAAGAAGAAAATGAATGTC
CTCCTCATTTCCAACATCTGGAAGCAGCTAATTCCGGATATGCAACAATG
ATTTCCAACTCCTCCCTGTATAGCTGTCATTCCCAAATCCACATTGGCTG
ACTATTACTTCTCTGTCTATCCTTTTTTCGCTCTTCATTCCCGGTCCCTC
TCCTTGAACATTATTTTCTCTCTCCCTTTCTTTTTTTTCCCCCTCCCTTC
CGTACCTTTTATTTTTTTTTTCCTCTTTTTCCCTTCTTTTTTTCCATCCC
TTAATTCTCCCCCCCTTCTCTATTTTTTTTCCTTTTCCCTATTTACCATA
TTTTTATTCTTTTTTCCTCCTCTCTTTTTCCCTTCTCCTCACCCTCTCTT
TTTCCTCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no359_h04.b1 MSMg01no359_h04.b1 CHROMAT_FILE:
MSMg01no359_h04.b1 PHD_FILE: MSMg01no359_h04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:56 2005
         (294 letters)



>mm_chr8_94326497_94327190
          Length = 694

 Score =  545 bits (282), Expect = e-160
 Identities = 288/290 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcccccagagccgtagagagtgtgcattgtgggggcggggagcaagactttggttt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcccccagagccgtagagagtgtgcattgtgggggcggggagcaagactttggttt 264

                                                                       
Query: 65  tatggtaggatatttcctaaatctaacttgaaatgtgagtgtccaagtgcccaccgtcac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tatggtaggatatttcctaaatctaacttgaaatgtgagtgtccaagtgcccaccgtcac 324

                                                                       
Query: 125 ggattagtgtgtgcagtggaaagtcatactgaaattcccgggatagctggagctcccaga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggattagtgtgtgcagtggaaagtcatactgaaattcccgggatagctggagctcccaga 384

                                                                       
Query: 185 taaggctgtagcggcgacccacgcgcgggccaggcctgctgtgggcctgcggactgaaca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 taaggctgtagcggcgacccacgcgcgggccaggcctgctgtgggcctgcggactgaaca 444

                                                             
Query: 245 actccccggctgcgattcttcattagagtgaagagccctagcttataggc 294
           |||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct: 445 actccccggctgcgattcttcagtagagtgaagagccctagcttagaggc 494


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no359_h04.g1 MSMg01no359_h04.g1 CHROMAT_FILE:
MSMg01no359_h04.g1 PHD_FILE: MSMg01no359_h04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:56 2005
         (357 letters)



>mm_chr8_94507095_94507851
          Length = 757

 Score =  675 bits (349), Expect = 0.0
 Identities = 355/357 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccctaagggcacaggccacatcagaactggcactgagccaagtgtcatcatgtcactagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ccctaagggcacaggccacatcagaactggcactgagccaagtgtcatcatgtcactagc 498

                                                                       
Query: 61  agatttcctgtttgaaactgttttcttattttcaggtcaggttcttgaacagggcttacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 agatttcctgtttgaaactgttttcttattttcaggtcaggttcttgaacagggcttacc 438

                                                                       
Query: 121 agaccacagagcaagggcccttgtacttatgtgccccctcctcatctccccttctggtcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 agaccacagagcaagggcccttgtacttatgtgccccctcctcatctccccttctggtcc 378

                                                                       
Query: 181 ctgtcctctgtcctcactgccaccctctagatcatcatgtcccataccaagttatggaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ctgtcctctgtcctcactgccaccctctagatcatcatgtcccataccaagttatggaca 318

                                                                       
Query: 241 tccttttgccacaaagtctcatacatccaaatgtattcaatgaagctatctgtacataac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tccttttgccacaaagtctcatacatccaaatgtattcaatgaagctatctgtacataac 258

                                                                    
Query: 301 agcccccaaataattctggctttgaagaagaaaatgaatgtcctcctcatttccaac 357
           |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||
Sbjct: 257 agcccccaaataattctggctttgaagaagaaaatgaatgttttcctcatttccaac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 357
Length of database: 757
Length adjustment: 9
Effective length of query: 348
Effective length of database: 748
Effective search space:   260304
Effective search space used:   260304
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)