BAC Information

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BAC

Clone NameMSMg01-359M13
Chromosome8 (Build37)
Map Location 59,749,555 - 59,750,031
singlet/doubletsinglet
Overlap genenone
Upstream geneHpgd, LOC664948, BC088983, Fbxo8, LOC100040431, EG624433, LOC654355
Downstream geneLOC100040515, Hand2, Scrg1, Sap30, Hmgb2, LOC547012, Galnt7, LOC100040634, LOC100040711
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-359M13.T7 (MSMg01no359_m13.b1)MSMg01-359M13.TJ (MSMg01no359_m13.g1)
ACCAG469116AG469117
length769745
length of high quality
(start - end)
471 (28 - 498)467 (54 - 520)
definitionCHROMAT_FILE: MSMg01no359_m13.b1 PHD_FILE: MSMg01no359_m13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:21 2005CHROMAT_FILE: MSMg01no359_m13.g1 PHD_FILE: MSMg01no359_m13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCACCTGAGGAAT
ACCGAATGGCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATC
AGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAG
AATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTG
GAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAA
CCACTCTGGAAATCAGTCTGGCTGTTCCTCAGAAAATTGGACATAGTACT
ACCAGAGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGGTGCCC
CAACGGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCATTATTT
ATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATG
GATACAGAAAATGTGGTACATCTACACAATGGAATACTACTCAGCTATTA
TAAAGAATGAATTTATGAAATTCCTAGGCCAATGGATGGGACTGGAGGGC
ATCATCCTGAGTGAGGGAACACATTCCCAAAGAAACTCTCCCCATATGTA
CTCCCTGAAAAGGGGAATTAATCCCCAACCTAGGATTCCCAGAAAAAAAG
GAAATTTGGTTATCACTGGAATTCTGAAAAATGAAAAATGAAAGGGGGAC
CTTTTGCCCTCTTTCAAATGGGAAAAAAAACCCAGTGGAGGGTTTTCAAA
AAAAGTTTGAACGGAATAG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXAGATAAATCTGTCTGCAGTCTTTTTACATCTAGACTTAGGATACTTA
TCTGGCTAATCTGATTGTCTGTGCTAATATTATTATTAGGACGACTTTAA
AAAAGCAAAACAATTACAAAAAATCAGTTCCACAACCTCCCAAATATTCC
AGAAATAGTCTGTCTGCAACCTTAAATTTTAGCAAATTTGATCGTCTTAA
AGTTCTATGGATCAAAAAAAGACACTCAGAAACATGATATGGAGAATCCC
ATGCCAACAGTTTTGTGGCTTAATTTTGTTTATTTCTAAAATTCCCAAAC
TAGTGGACATATCCCAGGATCATCTCAAATAGAGAAATTTTACTATGGTT
GTTGAGTAATGATATTTTTTTTATAAAATCACTTTACCATGTGTCTGACT
CAATAACTAGCAATAGTTAAACTCTTACATATTCCATCAAGTGCAGAAGG
AAAATAAAAGAGTAATCTAAGACCTGTGTCCACAGTAGAAAAAAGATGAA
TCTTTTCATCACTCTACATCCTAGGGATGCTTTGAGGACACTGTTTTTCT
CTTTCTATTCTGCAGGTATCTATTGGCCAAATGGGAGGGCGGAAAAAAGC
TCTTTTGAAGGTAACATTCTGTTTGGATGACTAAAATTGTTGTTCGGTCC
TTCACCTTCCCCCCTAATTCCCGCCTTTTTCAATTTCCTTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no359_m13.g1 MSMg01no359_m13.g1 CHROMAT_FILE:
MSMg01no359_m13.g1 PHD_FILE: MSMg01no359_m13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:21 2005
         (467 letters)



>mm_chr8_59749212_59750077
          Length = 866

 Score =  833 bits (431), Expect = 0.0
 Identities = 460/479 (96%), Gaps = 17/479 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   agataaatctgtctgcagtctttttacatctagacttaggatacttatctggctaatctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820 agataaatctgtctgcagtctttttacatctagacttaggatacttatctggctaatctg 761

                                                                       
Query: 61  attgtctgtgctaatattattattaggacgactttaaaaaagcaaaacaattacaaaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 attgtctgtgctaatattattattaggacgactttaaaaaagcaaaacaattacaaaaaa 701

                                                                       
Query: 121 tcagttccacaacctcccaaata--------------ttccagaaatagtctgtctgcaa 166
           |||||||||||||||||||||||              |||||||||||||||||||||||
Sbjct: 700 tcagttccacaacctcccaaatattccatttatgtgtttccagaaatagtctgtctgcaa 641

                                                                       
Query: 167 ccttaaattttagcaaatttgatcgtcttaaagttctatggatcaaaaaaagacactcag 226
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 ccttaaattttagcaaatttgatcgtcttaaagttctatggatcaaaaaaagacactcag 581

                                                                       
Query: 227 aaacatgatatggagaatcccatgccaacagttttgtggcttaattttgtttatttctaa 286
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 580 aaacatgatatggagaatcccatgccaatagttttgtggcttaattttgtttatttctaa 521

                                                                       
Query: 287 aattcccaaactagtggacatatcccaggatcatctcaaatagagaaattttactatggt 346
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 aattcccaaactagtggacatatcccaggatcatctcaaatagagaaattttactatggt 461

                                                                       
Query: 347 tgttgagtaatgatatttttttt-ataaaatcactttaccatgtgtctgactcaataact 405
           ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 460 tgttgagtaattatatttttttttataaaatcactttaccatgtgtctgactcaataact 401

                                                                      
Query: 406 agcaatagttaaactcttacatattccatcaagtgcagaaggaaaataaaagagtaatc 464
           |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 400 agcaatagttaaactcttacatattccatcaagtgcagaaggaaaataa--gagtaatc 344


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 866
Length adjustment: 10
Effective length of query: 457
Effective length of database: 856
Effective search space:   391192
Effective search space used:   391192
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)