Query= MSMg01no360_h01.b1 MSMg01no360_h01.b1 CHROMAT_FILE:
MSMg01no360_h01.b1 PHD_FILE: MSMg01no360_h01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:11 2005
(265 letters)
>mm_chr8_44360879_44361543
Length = 665
Score = 497 bits (257), Expect = e-145
Identities = 260/261 (99%)
Strand = Plus / Plus
Query: 5 gaattcattcaattctcttatccagcaaggccattagacgtgtcctcataatgcatgctt 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattcaattcttttatccagcaaggccattagacgtgtcctcataatgcatgctt 264
Query: 65 gtcttagcacctgccccaatcactgcaacagcaactgacagacatcttaatatttcaact 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtcttagcacctgccccaatcactgcaacagcaactgacagacatcttaatatttcaact 324
Query: 125 atcctatgacacaatctgttggaacttacattttactggtcttcctgctcggctcagaag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atcctatgacacaatctgttggaacttacattttactggtcttcctgctcggctcagaag 384
Query: 185 catttggataaggctgaaagcacagttaaggatccttcagtttcacacaatggcaagatt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 catttggataaggctgaaagcacagttaaggatccttcagtttcacacaatggcaagatt 444
Query: 245 ctattgtgttatttaaagttt 265
|||||||||||||||||||||
Sbjct: 445 ctattgtgttatttaaagttt 465
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 265
Length of database: 665
Length adjustment: 9
Effective length of query: 256
Effective length of database: 656
Effective search space: 167936
Effective search space used: 167936
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no360_h01.g1 MSMg01no360_h01.g1 CHROMAT_FILE:
MSMg01no360_h01.g1 PHD_FILE: MSMg01no360_h01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:11 2005
(581 letters)
>mm_chr8_44517822_44518805
Length = 984
Score = 946 bits (489), Expect = 0.0
Identities = 538/567 (94%), Gaps = 22/567 (3%)
Strand = Plus / Minus
Query: 37 agggttataaaatctccccatgttgcttttggtcctggtgtttcatcacaatagaagact 96
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 984 agggttataaaatctccccatgttgcttttggtcctggtgtttcatcacaatagaagact 925
Query: 97 agctacaacgatagtctaata------------------aaaagaaaagaaaagaaaaaa 138
|||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 924 agctacaacgatggtctaataaaaagaaaagaaaagaagaaaagaaaagaaaagaaaaaa 865
Query: 139 -atgtgcaattatcaaagaaccagtcttttattttaaactccaagtgtataaaatattta 197
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 864 gatgtgcaattatcaaagaaccagtcttttatttaaaactccaagtgtataaaatattta 805
Query: 198 aaacattaattattttaaaactaactccacgttaatgaagtgttgtacttccatatcaaa 257
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 804 aaacattaattattttaaaactaactccacgttaatgaaatgttgtacttccatatcaaa 745
Query: 258 atggaaaccagttaaaatgttggtattttaaaatgaattagcaatttgttttcccatgtt 317
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 744 atggaaaccagttaaaatgttggtattttaaaatgaattagcaatgtgttttcccatgtt 685
Query: 318 ttctagaaaatttctgtatatcttttttaagggcctttactattatttccccctcctcat 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ttctagaaaatttctgtatatcttttttaagggcctttactattatttccccctcctcat 625
Query: 378 attccaccctctaccttaatcttgaagccagtccctcagtttaacccttcctcttccata 437
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 atttcaccctctaccttaatcttgaagccagtccctcagtttaacccttcctcttccata 565
Query: 438 attcccctttaaccctttataccaatgcatccatct---cccccccttctagaaagaccc 494
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 564 attcccctttaaccctttataccaatgcatccatctccccccccccttctagaaagaccc 505
Query: 495 ccaccatggccccttagtcagactttcctatcctttgtggctattccaaataaagtacac 554
| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 504 ctaccatggccccttagtcagactttcctatcctttgtggctattccaaataaaatacac 445
Query: 555 atatctaaagattaaaagctgacatcc 581
|||||||||||||||||||||||||||
Sbjct: 444 atatctaaagattaaaagctgacatcc 418
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 984
Length adjustment: 10
Effective length of query: 571
Effective length of database: 974
Effective search space: 556154
Effective search space used: 556154
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
