Query= MSMg01no360_h02.b1 MSMg01no360_h02.b1 CHROMAT_FILE:
MSMg01no360_h02.b1 PHD_FILE: MSMg01no360_h02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:11 2005
(623 letters)
>mm_chr8_111284253_111285273
Length = 1021
Score = 1152 bits (596), Expect = 0.0
Identities = 613/620 (98%), Gaps = 4/620 (0%)
Strand = Plus / Plus
Query: 5 gaattccagaatcttatcacagctcttaagtccaggtctcgaaaagatgcctcgttgcct 64
||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||
Sbjct: 205 gaattccagaatcgtattacagctcttaagtccaggtctcgaaaag---cctcgttgcct 261
Query: 65 aaatgctttaccttcagacattccaagaaaatcgtatttggacgaccaagaaatattcct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 aaatgctttaccttcagacattccaagaaaatcgtatttggacgaccaagaaatattcct 321
Query: 125 tgtacatctttaattgtcccatctgtccaggggaaggggaaaaccggccctagagggcag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tgtacatctttaattgtcccatctgtccaggggaaggggaaaaccggccctagagggcag 381
Query: 185 aaccgaacaggttgcagaatgctggctaggaacagtagccacaacaaacaactgttttga 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 aaccgaacaggttgcagaatgctggctaggaacagtagccacaacaaacaactgttttga 441
Query: 245 ggacagagatggtaccagtgtcaagctgtggctggctccctgcagatgtgcaagccagct 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ggacagagatggtaccagtgtcaagctgtggctggctccctgcagatgtgcaagccagct 501
Query: 305 gtttacccacctccctcctgggaaaagctggaaaaggttgaagtcggacaggcgccacat 364
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 gtttacccacctccctcccgggaaaagctggaaaaggttgaagtcggacaggcgccacat 561
Query: 365 ccaagaggaccttcctggacccagtgacttttgacctattactgttcaaagtcacccggt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ccaagaggaccttcctggacccagtgacttttgacctattactgttcaaagtcacccggt 621
Query: 425 acgagccaccactattcagtgtgtgctaagtttttt-gctgacccggaaggtcctgagca 483
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 622 acgagccaccactattcagtgtgtgctaagtttttttgctgacccggaaggtcctgagca 681
Query: 484 ctccccggaattaccgtcctctagggtcagggtgggggagagtcactcttctctttcggg 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 ctccccggaattaccgtcctctagggtcagggtgggggagagtcactcttctctttcggg 741
Query: 544 cagacaagaatatttctaaagctggagtatatcacagcgacttaaatataacccgagtca 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 cagacaagaatatttctaaagctggagtatatcacagcgacttaaatataacccgagtca 801
Query: 604 gacctgcgcgtctacacgaa 623
||||||||||||||||||||
Sbjct: 802 gacctgcgcgtctacacgaa 821
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1021
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1011
Effective search space: 619743
Effective search space used: 619743
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no360_h02.g1 MSMg01no360_h02.g1 CHROMAT_FILE:
MSMg01no360_h02.g1 PHD_FILE: MSMg01no360_h02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:11 2005
(581 letters)
>mm_chr8_111468370_111469346
Length = 977
Score = 1089 bits (563), Expect = 0.0
Identities = 575/581 (98%), Gaps = 4/581 (0%)
Strand = Plus / Minus
Query: 1 atcttgtttctggctggaggaattatgattagcgacactgaccaggttgctttcctgcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 atcttgtttctggctggaggaattatgattagcgacactgaccaggttgctttcctgcct 718
Query: 61 cttccaaagtggagttcccatctcggtccgcagcggcagcagggaggaacatgctactag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 cttccaaagtggagttcccatctcggtccgcagcggcagcagggaggaacatgctactag 658
Query: 121 gcataaccatctcaggagcggtcacctgaggggagaaaggcagcgagacgacagagtcaa 180
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 657 gcataaccatctcaggagcggtcacctgaggggagagaggcagcgagacgacagagtcaa 598
Query: 181 ggcgcggggggggggaaacagacacaaaatacgaaaggtttaaaaagtattcaataagca 240
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 ggcgc----gggggaaaacagacacaaaatacgaaaggtttaaaaagtattcaataagca 542
Query: 241 aaattagccttcaccagcgtagaagctggaggtgtcactttgcatagctcagtgaagact 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 aaattagccttcaccagcgtagaagctggaggtgtcactttgcatagctcagtgaagact 482
Query: 301 catgtttattagacaaagctcacatcagtcaaaagtgtttctacggttacattctggaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 catgtttattagacaaagctcacatcagtcaaaagtgtttctacggttacattctggaca 422
Query: 361 taattagcagtgcacacttgaagagtaatcttattattaatatttttcttttatgcagaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 taattagcagtgcacacttgaagagtaatcttattattaatatttttcttttatgcagaa 362
Query: 421 ttttgactttgatcactgacaatgttttgtcacgggctgtgaaacttcttgggcaaccaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ttttgactttgatcactgacaatgttttgtcacgggctgtgaaacttcttgggcaaccaa 302
Query: 481 ttaggtagataagttgaaaggcccaccttaagctaccgcaaacataataagggccctaat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ttaggtagataagttgaaaggcccaccttaagctaccgcaaacataataagggccctaat 242
Query: 541 taaatcatacctagtaaagtacgcggtaatctggaagcagg 581
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 taaatcatacctagtaaagtacgcggtaatctggaagcagg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 977
Length adjustment: 10
Effective length of query: 571
Effective length of database: 967
Effective search space: 552157
Effective search space used: 552157
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
