Query= MSMg01no361_e11.b1 MSMg01no361_e11.b1 CHROMAT_FILE:
MSMg01no361_e11.b1 PHD_FILE: MSMg01no361_e11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:16 2005
(480 letters)
>mm_chr8_80225476_80226355
Length = 880
Score = 723 bits (374), Expect = 0.0
Identities = 441/476 (92%), Gaps = 20/476 (4%)
Strand = Plus / Minus
Query: 5 gaattccacatgtgaattgtaccatttctctctctctctctctctctctctctctctctc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 gaattccacatgtgaattgtaccatttctctctctctctctctctctctctctctctctc 737
Query: 65 tctctctctctctctcacacacacacacacacacacacacacacacacacacacacacac 124
||||||||||||||| | | | | | | | | |||||||||
Sbjct: 736 tctctctctctctct--------------------ctctctctctctctctcacacacac 697
Query: 125 acacacacacacacactagtgttgcttgtaaaaatagtaaaataagttgtaataattttg 184
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 696 acacacacacacacactagtgttgcttgtaaaaatagtaaaataagttgtaataatttgg 637
Query: 185 ggaaatatattggatcttaaaacaaaacactcaacatgtcatttacttacacttgaaaat 244
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 ggaaatatattggatcttagaacaaaacactcaacatgtcatttacttacacttgaaaat 577
Query: 245 gaagaagatactaattcaagaaaatatagtataacagtaaacatttcctactctggggga 304
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 576 gaagaagatactaattcaagaaaatatagtataacagcaaacatttcctactctggggga 517
Query: 305 atcagagatgtgcattctgagtcagagaattctacacacttgctctttcagaattcattc 364
||||| ||||||||||||||||||| |||||||||||||||| || ||||||||||||||
Sbjct: 516 atcagtgatgtgcattctgagtcagggaattctacacacttgttccttcagaattcattc 457
Query: 365 acctaagaattgtcaaatccatttgtcctcatactagattattgttattagaaaaagcat 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 acctaagaattgtcaaatccatttgtcctcatactagattattgttattagaaaaagcat 397
Query: 425 ctttggcacattttccaacctactgcatatcacaaaaatgttcagaatggaaccca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 ctttggcacattttccaacctactgcatatcacaaaaatgttcagaatggaaccca 341
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 110
Number of extensions: 33
Number of successful extensions: 32
Number of sequences better than 10.0: 1
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space: 408900
Effective search space used: 408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no361_e11.g1 MSMg01no361_e11.g1 CHROMAT_FILE:
MSMg01no361_e11.g1 PHD_FILE: MSMg01no361_e11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:16 2005
(473 letters)
>mm_chr8_80072919_80073789
Length = 871
Score = 876 bits (453), Expect = 0.0
Identities = 468/473 (98%), Gaps = 2/473 (0%)
Strand = Plus / Plus
Query: 1 cagccgcactctccaggaggcaggagagagggtggaaacctttggttgcagcctgccaaa 60
||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct: 201 cagccgcactctccaggaggcag-agagagggtggaaacctttggttgcagtctgccaaa 259
Query: 61 aaaccccattccagaaaatgattttacagcctagtactccaagaccatagtgggccgcgg 120
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 260 aaaccccattccagaaaatgactttacagcctagtactccaagaccatagtgggccgcgg 319
Query: 121 ggcgctccctggtgtgacgtcatcacagcgcttcgccgcaggatgcgcgcgcagccctgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ggcgctccctggtgtgacgtcatcacagcgcttcgccgcaggatgcgcgcgcagccctgt 379
Query: 181 ccgccgctgggaaggcggggcttcctgctgtgtgcacccagtgcctctgtgcgtccagtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ccgccgctgggaaggcggggcttcctgctgtgtgcacccagtgcctctgtgcgtccagtt 439
Query: 241 gctgcgaccggcccagggaagcgcgccgtggagactcttttcccggacgaggccatcctc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gctgcgaccggcccagggaagcgcgccgtggagactcttttcccggacgaggccatcctc 499
Query: 301 cttcgtgggcttccgagcggagacttagccatgccgaactcgaggcccaggccccgccgg 360
||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct: 500 cttcgtgggcttccgagcg-agacttatccatgccgaactcgaggcccaggccccgccgg 558
Query: 361 ggcgccgggggtggcgcaggtgcggccggccgggaccggctggtggcacggtccttgcag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ggcgccgggggtggcgcaggtgcggccggccgggaccggctggtggcacggtccttgcag 618
Query: 421 agtgctgagcactgtctaggtgaccaggacttcggcactgcttatgcccatta 473
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 agtgctgagcactgtctaggtgaccaggacttcggcactgcttatgcccatta 671
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 871
Length adjustment: 10
Effective length of query: 463
Effective length of database: 861
Effective search space: 398643
Effective search space used: 398643
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
