Query= MSMg01no361_l04.b1 MSMg01no361_l04.b1 CHROMAT_FILE:
MSMg01no361_l04.b1 PHD_FILE: MSMg01no361_l04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:49 2005
(598 letters)
>mm_chr8_120910132_120911129
Length = 998
Score = 1120 bits (579), Expect = 0.0
Identities = 591/595 (99%), Gaps = 2/595 (0%)
Strand = Plus / Minus
Query: 5 gaattcatttgttg-caatggtatagattttaatacttctataataaaaatgtaatactc 63
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 gaattcatttgttgac-atggtatagattttaatacttctataataaaaatgtaatactc 740
Query: 64 tcttatgtgttttttaataaatgtgtaattagtaattttactcccctaaaacttatacga 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 739 tcttatgtgttttttaataaatgtgtaattagtaattttactcccctaaaacttacacga 680
Query: 124 catcactcatacttcacttcagtgtgtgctggaattaggccaatcaatttatttttaatg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 catcactcatacttcacttcagtgtgtgctggaattaggccaatcaatttatttttaatg 620
Query: 184 gactagaggagaaattctcaggatatccccgagacttccgctttgccaccagcctttact 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 gactagaggagaaattctcaggatatccccgagacttccgctttgccaccagcctttact 560
Query: 244 ctgtgcatgatggatagtttctattttaaaaaatggcatttgttgtgatataatttaaat 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ctgtgcatgatggatagtttctattttaaaaaatggcatttgttgtgatataatttaaat 500
Query: 304 tatttttctgccaggagcatgcgttctgcagagttacaattatgcaaagggaaattacaa 363
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tacttttctgccaggagcatgcgttctgcagagttacaattatgcaaagggaaattacaa 440
Query: 364 atcatattcctgctttatcttcttttacagtcctcgttgcagctacttttgctcaggtac 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 atcatattcctgctttatcttcttttacagtcctcgttgcagctacttttgctcaggtac 380
Query: 424 aattaggttagagaaaacaagatgctgtgtgtatattaagaacaattctacagggagaat 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 aattaggttagagaaaacaagatgctgtgtgtatattaagaacaattctacagggagaat 320
Query: 484 tcattttggctcttggttaattacaagagaaaaatggaagccaatctgggaaaaagcaat 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tcattttggctcttggttaattacaagagaaaaatggaagccaatctgggaaaaagcaat 260
Query: 544 acttggggttcagaagtaacaagactcccaggtaaagcactgagtctgatcaata 598
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 acttggggttcagaagtaacaagactcccaggtaaagcactgagtctgatcaata 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 998
Length adjustment: 10
Effective length of query: 588
Effective length of database: 988
Effective search space: 580944
Effective search space used: 580944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no361_l04.g1 MSMg01no361_l04.g1 CHROMAT_FILE:
MSMg01no361_l04.g1 PHD_FILE: MSMg01no361_l04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:49 2005
(530 letters)
>mm_chr8_120763361_120764290
Length = 930
Score = 1017 bits (526), Expect = 0.0
Identities = 529/530 (99%)
Strand = Plus / Plus
Query: 1 aaatgacatagaattggccatgtgattatcaggaagacatggctacctttggagcgtcgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaatgacatagaattggccatgtgattatcaggaagacatggctacctttggagcgtcgc 260
Query: 61 agagatgctgtggattctgattgtaccatttctgaactgtgtatatggggacacatcact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agagatgctgtggattctgattgtaccatttctgaactgtgtatatggggacacatcact 320
Query: 121 gacccttgctgatctgtcttcatcagctgccctgtctgtcactacagccaccataaacat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gacccttgctgatctgtcttcatcagctgccctgtctgtcactacagccaccataaacat 380
Query: 181 gtgactcccaagctaccaaaatgtgtccggtgtgtcttgaggcatccaggaagggtaaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgactcccaagctaccaaaatgtgtccggtgtgtcttgaggcatccaggaagggtaaag 440
Query: 241 actccattgcttggagtcaggaagcagaagttaacgaaagctactggtctacctgctttc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actccattgcttggagtcaggaagcagaagttaacgaaagctactggtctacctgctttc 500
Query: 301 tccctattcagtaccgggccccaacccacaggaaggcgccattgacaattacagtgggtt 360
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 501 tccctattcagtaccgggccccaacccacgggaaggcgccattgacaattacagtgggtt 560
Query: 361 ttcctatcttcagttgacccagtcaagacaatctctcacaagcatcccagagacaccttt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttcctatcttcagttgacccagtcaagacaatctctcacaagcatcccagagacaccttt 620
Query: 421 cctgggtgggtgtaggccttactttcaaaggtaacagtcaaaatgtctctggtggcagat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cctgggtgggtgtaggccttactttcaaaggtaacagtcaaaatgtctctggtggcagat 680
Query: 481 ttcatctctgtctttagtgagggacacatgggtacaaagtcagtatagag 530
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttcatctctgtctttagtgagggacacatgggtacaaagtcagtatagag 730
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 930
Length adjustment: 10
Effective length of query: 520
Effective length of database: 920
Effective search space: 478400
Effective search space used: 478400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
