BAC Information

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BAC

Clone NameMSMg01-361L22
Chromosome8 (Build37)
Map Location 19,471,136 - 19,471,289
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040466, Mcph1, Angpt2, Agpat5, LOC100040486, Xkr5, Defb40, Defb37, Defb38, Defb39, Defb12, Defb34, EG546038, Spag11, Defb14, Defb4, EG654452, Defb6, EG574081, Defb5, Defb3, Defb54-ps, LOC100040504, LOC100040514, Defb8
Downstream geneLOC100040528, LOC100041511, Defb7, LOC670326, LOC100040561, LOC624198, EG665730, 4930467E23Rik, LOC100041567, LOC547150, LOC100040599, EG665822, 6820431F20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-361L22.T7 (MSMg01no361_l22.b1)MSMg01-361L22.TJ (MSMg01no361_l22.g1)
ACCAG470597AG470598
length798784
length of high quality
(start - end)		472 (49 - 520)459 (80 - 538)
definitionCHROMAT_FILE: MSMg01no361_l22.b1 PHD_FILE: MSMg01no361_l22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:56:52 2005CHROMAT_FILE: MSMg01no361_l22.g1 PHD_FILE: MSMg01no361_l22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:56:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCTAGTCTTGTCTTAGTATCTGGTTGCTCTCAGAGCCGGCCTG
AGGCCTAAGGTAGTTTTTTAGCCATCATATTCCCTATATGCTGTAGAACA
TTTGAAGGAGATCATTGACTTGTATTGAGGCACAGGTTGACACTGAGTCT
GTAGGGCTTCCCTCAGCCAGAGGCTTTTTCCTATATAATCTAGGCATGTT
CTCTCCTCTCTCCTCTTCTCTCTGAATGTATGCATTCTCTCTTTCTTTCC
CCACCCCATCTGTCTTTGCTCCTCTTGGAAACTTCCCTGGCTGCTGCTGC
CGCCGCCTCCTCCTCCTCCTCCTTTTTCTTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAACTAGAGTTAAACT
AGTAACTTAAAGTGGCTTAAGGGGGTAAAAGAAAATCATGGAAGCATCCT
CATATATCTTGTTAAATATTTTGGGTGGACTTTAAGAACTGGAGGCTTGG
TGTCTCCAGATTTCTCCATTAGGCACTATTGTTTGGTTCAATTTTCCTTA
AACCTGACCCAATGCGAAGAACTGTTTTATTGACTGGAGGAATCCGTGGT
CTGGAGGAACACTATTCTTCCCGTCTAACTTTTGGGGGTTTTATCACATT
CTGTCCTTGTTCGTGTTTTTCTCTCCATTTTTCCAATTCTTCCCTCCCTC
TTTAAAATAAACTTCACCCTTATTGTTCTATACCTCCCTCCCTCTCCN

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGAGGGTGGACTCCAGAAAA
TCAAATAACCCCATTAAAAAATGGGGCTCAGAGCTAAACAAAGAATTCTC
ACCTGAGGAATACCGAATGGCTGAGAAGCACCTGAAAAAATTTTCAGCAT
CCTTAATCATCAGGGAAATGCAAATCAAAACAACCTTGAGATTCCACCTC
ACACCAGTGAGAATGGCTAAGATCAAAATTCAGGTGTCAGCAGATGCTGG
TGAGGATGTGGAGAAAGAGAAACACTCCTCCATTGTTGGTGGGATTGCAA
GCTTGTACATCCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAATTGG
ACATAGTACTACCGGAGGATCCTGCAATACCTCTCCTGGGCATATATCCA
GAAGATGTTCCAACCGGTAAGCAGGACACATGCTCCACTATGTTCATAGC
AGCCTTATTTATAGTAGCCAGAAGCTGGAAAGAACCCAGATGTACCTCAA
CAGAGGAATGGATACAGAAAATGTGGGACATTTACACAATGGAGTACTTA
CTACTCAGTCATTATTAAAGAAGAATTCTTGAAATCCTAAGGCAATGGGT
GGACCTGGAGGGCTCCTCCTTGAGTGAGGGAACCATCCCCCAAGGAACTC
CATGAATGTACCCCCGGAAAAGGGGGATTAATCCCCAAACTTATAAAACC
CAAAATATAAAACATTTGGTAATACATTGACCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no361_l22.b1 MSMg01no361_l22.b1 CHROMAT_FILE:
MSMg01no361_l22.b1 PHD_FILE: MSMg01no361_l22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:52 2005
         (472 letters)



>mm_chr8_19470417_19471289
          Length = 873

 Score =  153 bits (79), Expect = 3e-41
 Identities = 112/123 (91%), Gaps = 1/123 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcctagtcttgtcttagtatctggttgctctcagagccggcctgaggcctaaggt 63
           ||||||||||||||||||||||| |||||||  ||||||||| |  || || |||||| |
Sbjct: 204 ggaattcctagtcttgtcttagtctctggttattctcagagctgatctcagacctaagat 263

                                                                       
Query: 64  agttt-tttagccatcatattccctatatgctgtagaacatttgaaggagatcattgact 122
           ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 264 agtttctttagccatcatattccctatatgctctagaacatttgaaggagatcattgact 323

              
Query: 123 tgt 125
           |||
Sbjct: 324 tgt 326



 Score =  130 bits (67), Expect = 2e-34
 Identities = 131/157 (83%), Gaps = 11/157 (7%)
 Strand = Plus / Plus

                                                                       
Query: 120 acttgtattgaggcacaggttgacactgagtctgtagggcttccctcagccagaggcttt 179
           |||||| ||||||||||||||||| |||||||||||||||| |||||  |||||||||||
Sbjct: 720 acttgtgttgaggcacaggttgaccctgagtctgtagggctgccctcccccagaggcttt 779

                                                                       
Query: 180 ttcctatataatctaggcatgtt---ctctcctctctcctcttctctctgaatgtatgca 236
           | ||||| | |||||| ||||||   |||||||||||||||||||||||| ||| | || 
Sbjct: 780 tccctatgttatctagacatgttgttctctcctctctcctcttctctctgcatgcaggct 839

                                                
Query: 237 ttctctctttct-ttcc----ccaccccatctgtctt 268
           ||| ||| |||| ||||    |||||   ||||||||
Sbjct: 840 ttcactccttctcttcctagcccacc---tctgtctt 873


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 472
Length of database: 873
Length adjustment: 10
Effective length of query: 462
Effective length of database: 863
Effective search space:   398706
Effective search space used:   398706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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