NGGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAATATCTAAGAGAAAAGGATTTTTATTAATTATCCTCTGTGG
TTGAATTAGGGAAAAAGATGGAAGAAGCTGAGGAGGACCAGCAGTGTAAA
ATACCCTGGACCCTGGGATCTCTCAAACACTGGACCACCAACCAGGCAGC
ATACACCAGCTGATATGAAGCCCCCAACACATATACAGCCAAGGACTGCT
ACTTCTGGGTTCAGTCAGAGGAGATACACCTAACCCTCAAAAGACTGGAA
GCCCCAGGGCATTTAAAGATCTGGTTGGGTGGGAGTTGAGCTGTGGGGAC
ATCCTGGTGGAGACAAGGGATAGGGAGGAGGTATGGTATGTGGAACAGTT
GGAGGGTGGACCATGAAGTTAATAAAATCTGGTGTGTGAAATAAATAAAT
AAATAATTAAATAGATTAAACTAACAAAAAAGAATAGAAATTAACCTATA
AAAAAAGCGATCATCTTGATTGTGTCACTCTGTAATCTCCTGCTCACAGA
CCTATACTTTTCTCTCCTATATATTTAAACATTTTTCAACATATATCTTT
TAACTTTTAAATTACGCGTGTGTGTCCCTTCTTGCCTTTTTTTCTCCTCC
CTTCTTCTTTCTCTTTTTCCCCCTTCCTTTTTTTCGACTCTCTATTCCCT
CCCGCTTTTCTTTCCTTCACCCTTTTCCTCCTTTCTTTTTTTTTT

NNCCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTGAAATGAATCCGTGCTCTT
ATTGGGGAACTAGTGAGACAATGCACATAAAAATGAAAGCATCTTTATAA
TCAGGGACGTTATTGTTTGTGTGTGTGTTTGTGTTTAATATTTACCTATC
TGGATTTCCATTTCTGTTTTGTGAAAATGTGAACAAATAAAGTATAAATA
AAGTATAAACATTATCTTCCTCAAATCATGTAAAAATGTCATTAATTTGA
AGTTCTATTCATTAGTTCTAGATTTTATCTCAGAAACCAGATTATACCAG
ACACTTACCTTCATATAAGAATAATAAAGACAGAGACATCGAAGACAAAA
TGCATTCCTGTTGAAAAAAAAAATTGCTTTTTTTCTTTTGCTTTTATGCA
GAAGTGCACTAGTGTGTGTGTCCGTCCCATAATCAGAGAAAATATACTCT
GGGAGATGTTAATCATTTAAAACAATAAACGTCATGTTGAAGAGAGCTAA
AGCAAGATAGGAAATAAACTTCAAAATCCTGAAGTGAATAAGTTCAGGCA
AAAATCATGGAACAATGTGAAAGATTCACCCATTGTTCATCGACCCCCTC
CCCACACACACATGTTATCTCTTCTACATTTCAGCCGAAAGTGTACAAAT
ATTTATCATTTCATAGATTTTTCAGATGTGATGTGAAATGAGAATTTTGG

Query= MSMg01no361_m14.g1 MSMg01no361_m14.g1 CHROMAT_FILE:
MSMg01no361_m14.g1 PHD_FILE: MSMg01no361_m14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:56 2005
         (601 letters)



>mm_chr8_52969437_52970429
          Length = 993

 Score =  996 bits (515), Expect = 0.0
 Identities = 549/569 (96%), Gaps = 18/569 (3%)
 Strand = Plus / Minus

                                                                       
Query: 43  atgcacataaaaatgaaagcatctttataatcagggacgttattgtttgtgtgtgtgttt 102
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 585 atgcacataaaaatgaaagcatctttataataagggacgttattgtttgtgtgtgtgttt 526

                                                                       
Query: 103 gtgtttaatatttacctatctggatttccatttctgttttgtgaaaatgtgaacaaataa 162
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 gtgtttaatatttacctatctggatttccatttctgttttgtgaaaatgtgaacaaataa 466

                                                                       
Query: 163 agtataaataaagtataaacattatcttcctcaaatcatgtaaaaatgtcattaatttga 222
           |||||||||  ||    |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 agtataaat--ag----aacattatcttcctcaaatcatgtaaaaatgtcattaatttga 412

                                                                       
Query: 223 agttctattcattagttctagattttatctcagaaaccagattataccagacacttacct 282
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 agttctattcattagttctagattttatctcagaaaccagattataccagacacttacct 352

                                                                       
Query: 283 tcatataagaataataaagacagagacatcgaagacaaaatgcattcctgttgaaaaaaa 342
           ||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||
Sbjct: 351 tcatataagaataataaagacagagacatcgcagacaaaatgcattcctgttg--aaaaa 294

                                                                       
Query: 343 aaattgctttttttcttttgcttttatgcagaagtgcacta------gtgtgtgtgtccg 396
           |||||||||||||||||||||||||||||||||||||||||      |||||||||||||
Sbjct: 293 aaattgctttttttcttttgcttttatgcagaagtgcactagtgtgtgtgtgtgtgtccg 234

                                                                       
Query: 397 tcccataatcagagaaaatatactctgggagatgttaatcatttaaaacaataaacgtca 456
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 tcccataatcagagaaaatatactctgggagatgttaatcatttaaaacaataaacgtca 174

                                                                       
Query: 457 tgttgaagagagctaaagcaagataggaaataaacttcaaaatcctgaagtgaataagtt 516
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 tgttgaagagagctaaagcaagataggaaataaacttcaaaatcctgaagtgaataagtt 114

                                                                       
Query: 517 caggcaaaaatcatggaacaatgtgaaagattcacccattgttcat----cgaccccctc 572
           ||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||
Sbjct: 113 caggcaaaaatcatggaacaatgtgaaagattcacccattgttcatcgaccgaccccctc 54

                                        
Query: 573 cccacacacacatgttatctcttctacat 601
           |||||||||||||||||||||||||||||
Sbjct: 53  cccacacacacatgttatctcttctacat 25


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 993
Length adjustment: 10
Effective length of query: 591
Effective length of database: 983
Effective search space:   580953
Effective search space used:   580953
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)