BAC Information

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BAC

Clone NameMSMg01-362F14
Chromosome8 (Build37)
Map Location 60,735,627 - 60,736,067
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040515, Hand2, Scrg1, Sap30, Hmgb2, LOC547012, Galnt7, LOC100040634, LOC100040711
Downstream gene4930431L04Rik, BC030500, LOC665116, LOC436042
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-362F14.T7 (MSMg01no362_f14.b1)MSMg01-362F14.TJ (MSMg01no362_f14.g1)
ACCAG471055AG471056
length765767
length of high quality
(start - end)		444 (44 - 487)521 (75 - 595)
definitionCHROMAT_FILE: MSMg01no362_f14.b1 PHD_FILE: MSMg01no362_f14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:41 2005CHROMAT_FILE: MSMg01no362_f14.g1 PHD_FILE: MSMg01no362_f14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCTGCCTCCATCCTCCATGAGGGTCCCTGTTCATGTTTTACTGATTC
TGCACAAGTAAAACACTTATTCAACCAAAGGAACCAATGTCAGGATATAA
CTTCTGTGATGAGAAAGCCTGAAAAACTCATGCTTTTTGGGTCACTCAGT
GAAATATTTTATTTAATAAAACATAGGAACTAAGTGAGAAGGCTATTTGC
TTATGATCTTCCTAGGGCATTTTGCTCCTATCTAACATTCAGATATAATT
TTATATTTATTAATAAATTAACAAATTTAACTCCATAAAAATGTAGATAT
TTATCCTTTAAATATGACAAACTAGAATTTTACATTCTGTTCTATTGCTT
ATAAGTATGGTCTTTAATCAGTTAACTTTCTGAACCATGGTTTGTTAAAT
GTCGAGATTATTTTCAAATCTAGACTGTTATCTTCTTAGAAGCTTAAAAT
TAAAAAAGTAAAACAATTTTCTTTATTGATAGCAAGCTCAATATATTTTG
ATACTGTGCCATATTTTTAATTGCCCCACATTCTTCCATTATTCACTGAA
AACCAAATCCTGGACACCAAGGGCCGGTCCCAACTCAATTTTCCCTAAGG
GTTGATCCTTAAACCCTAGATTACAAATGGCTTTTACTCTCTGGGCACCG
TTTATTTTAATACGGCATTTATCACTGGGATACCAAATTTCTAAATTATT
TTACCTCGCCCGATG

ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCTGA
GAAGCACCTGAAAAAATGTTCAGCATCCTTACTCATCGGGGAAATGCAAA
TCAAAACAACCCTGAGATTCCATCTCACACCATTCAGAATGGCTAAGATC
AAAAATTCAGGTGACAGCACATGCTGGCAAGGATCCAGAGAAAGAGGAAC
AGTCCTCTGTTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAAT
CAGTCTGGCGGTTCCTCAGAAAATTGGACATATTACTACTGGAGGATCCT
GCAATACCTCTCCTTTGCATATATCCAGAAGATGTTCCAACTAGTAAGAA
AGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAA
GCTTGAAAGAACCCAGATGCCCCTCAACCGAGGAATGGATTCAAAAAAAC
GTGGTACATATACACAATGGAGTACTACTACTCAGCTATTAAAAAGAATG
AATTTATGAAATTCCTAGGCAAATGGTTGGACCTGGAGGGCATCATCCTG
AGTGAGGTAACCCAGTCACAAAAGAACTCAAATGATATGTACTCCCTGAC
AATTGGATGTTAGCCCAGACATTTAAAAACCCACGATTTCAGATACCATT
TTGAAGAACATGAAACTGAATAAGAACGAAAACCACAGGGGGGGTACTTT
GCCCCCTCCTCATAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no362_f14.b1 MSMg01no362_f14.b1 CHROMAT_FILE:
MSMg01no362_f14.b1 PHD_FILE: MSMg01no362_f14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:41 2005
         (444 letters)



>mm_chr8_60735424_60736267
          Length = 844

 Score =  837 bits (433), Expect = 0.0
 Identities = 439/441 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctctgcctccatcctccatgagggtccctgttcatgttttactgattctgcaca 63
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctctgcccccatcctccatgagggtccctgttcatgttttactgattctgcaca 263

                                                                       
Query: 64  agtaaaacacttattcaaccaaaggaaccaatgtcaggatataacttctgtgatgagaaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agtaaaacacttattcaaccaaaggaaccaatgtcaggatataacttctgtgatgagaaa 323

                                                                       
Query: 124 gcctgaaaaactcatgctttttgggtcactcagtgaaatattttatttaataaaacatag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gcctgaaaaactcatgctttttgggtcactcagtgaaatattttatttaataaaacatag 383

                                                                       
Query: 184 gaactaagtgagaaggctatttgcttatgatcttcctagggcattttgctcctatctaac 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gaactaagtgagaaggctatttgcttatgatcttcctagggcattttgctcctatctaac 443

                                                                       
Query: 244 attcagatataattttatatttattaataaattaacaaatttaactccataaaaatgtag 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 attcagatataattttatatttattaataaattaacaaatttaactccataaaaatgtag 503

                                                                       
Query: 304 atatttatcctttaaatatgacaaactagaattttacattctgttctattgcttataagt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 atatttatcctttaaatatgacaaactagaattttacattctgttctattgcttataagt 563

                                                                       
Query: 364 atggtctttaatcagttaactttctgaaccatggtttgttaaatgtcgagattattttca 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 atggtctttaatcagttaactttctgaaccatggtttgttaaatgtcgagattattttca 623

                                
Query: 424 aatctagactgttatcttctt 444
           |||||||||||| ||||||||
Sbjct: 624 aatctagactgtaatcttctt 644


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 844
Length adjustment: 10
Effective length of query: 434
Effective length of database: 834
Effective search space:   361956
Effective search space used:   361956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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