Query= MSMg01no362_h19.b1 MSMg01no362_h19.b1 CHROMAT_FILE:
MSMg01no362_h19.b1 PHD_FILE: MSMg01no362_h19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:52 2005
(557 letters)
>mm_chr8_101060094_101061052
Length = 959
Score = 1023 bits (529), Expect = 0.0
Identities = 555/569 (97%), Gaps = 12/569 (2%)
Strand = Plus / Minus
Query: 1 atcttctgaatc-caactggaattcattctgcaggtgaggaacattagaactgttactcc 59
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 atcttctgaatcacaactggaattcattctgcaggtgaggaacattagaactgttactcc 627
Query: 60 ccatgcaaaactataaatgatggaactaatgtctttgtgtcactgttggcagatgctttc 119
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 ccgtgcaaaactataaatgatggaactaatgtctttgtgtcactgttggcagatgctttc 567
Query: 120 agagagatcacagtagctctgcactctatgtccataaagagaagggg-aaaaaatcaaac 178
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 566 agagagatcacagtagctctgcactctatgtccataaagagaaggggaaaaaaatcaaac 507
Query: 179 aacataaattgaaatagaaattgcatcatttccttagaaagcactttcactgaatgctta 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 aacataaattgaaatagaaattgcatcatttccttagaaagcactttcactgaatgctta 447
Query: 239 ttactcataataaataggctctttggatgacctgattatttatttaagcctttagcagca 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ttactcataataaataggctctttggatgacctgattatttatttaagcctttagcagca 387
Query: 299 ttacattaaaagaactcccacctaaggccccactcaacttggctgttatgattcaaatta 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ttacattaaaagaactcccacctaaggccccactcaacttggctgttatgattcaaatta 327
Query: 359 ccagacaaaactattttaaatgcaagcttcaccatgagctgtacgagtgacacttgaatc 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ccagacaaaactattttaaatgcaagcttcaccatgagctgtacgagtgacacttgaatc 267
Query: 419 tgaccagattttctttttaaaggctgaaatatgactttgtttcaagctcatcttctcaaa 478
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 266 tgaccagattttctttttaaaggctgaaatatgaccttgtttcaagctcatcttctcaaa 207
Query: 479 aggtcaacac--------acacacacacacacacacacacacacacacacacacacacac 530
|||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 aggtcaacacacacacatacacacacacacacacacacacacacacacacacacacacac 147
Query: 531 acacac--acactcaaagacacacacact 557
|||||| |||||||||||||||||||||
Sbjct: 146 acacacatacactcaaagacacacacact 118
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 101
Number of extensions: 26
Number of successful extensions: 26
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 959
Length adjustment: 10
Effective length of query: 547
Effective length of database: 949
Effective search space: 519103
Effective search space used: 519103
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no362_h19.g1 MSMg01no362_h19.g1 CHROMAT_FILE:
MSMg01no362_h19.g1 PHD_FILE: MSMg01no362_h19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:52 2005
(553 letters)
>mm_chr8_100908802_100909754
Length = 953
Score = 1038 bits (537), Expect = 0.0
Identities = 549/553 (99%)
Strand = Plus / Plus
Query: 1 ttagaggatttggagactgtcttatctaatttctttgcttcatagtcagggtaaatgatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttagaggatttggagactgtcttatctaatttctttgcttcatagtcagggtaaatgatg 260
Query: 61 cacggaccagggaaatgtcatgtcacaaatcacattagtatttttttttctgagatttag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacggaccagggaaatgtcatgtcacaaatcacattagtatttttttttctgagatttag 320
Query: 121 gtcctaaattaacacagaagaaaaattgataaaaattacaccatagaaaaaattcttcag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtcctaaattaacacagaagaaaaattgataaaaattacaccatagaaaaaattcttcag 380
Query: 181 ttcaatttattaaacatttaagtaccaaacaagtggaaggttgacagcatgcaaaggttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcaatttattaaacatttaagtaccaaacaagtggaaggttgacagcatgcaaaggttt 440
Query: 241 cctgtaaggaagacatatttatttaagatattatgctgagtatttaacaagtcagccaat 300
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 441 cctgtaaggaagacatatttatttaagatattatgatgagtatttaacaagtcagccaat 500
Query: 301 aattactgaattatagatatctaactttttacctaaaagaattaatttagggaaaatgat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aattactgaattatagatatctaactttttacctaaaagaattaatttagggaaaatgat 560
Query: 361 gatcatgcaagcaaatccaggagtgacatgtaatttaaaacaaagcaatcacagaatgtc 420
||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 561 gatcatgcaagcaaaaccaggactgacatgtaatttaaaacaaagcaatcacagaatgtt 620
Query: 421 tctgaggttagaattgatcatgtgaaatcaagagttataagacaaggttgaaaatactaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tctgaggttagaattgatcatgtgaaatcaagagttataagacaaggttgaaaatactaa 680
Query: 481 acattaaagttaagtgatataaatatatacagcatacaatagccacaaaattcttagctc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acattaaagttaagtgatataaatatatacagcatacaatagccacaaaattcttagctc 740
Query: 541 ttgatatcatcca 553
|||||||||||||
Sbjct: 741 ttgatatcatcca 753
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 953
Length adjustment: 10
Effective length of query: 543
Effective length of database: 943
Effective search space: 512049
Effective search space used: 512049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
