BAC Information

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BAC

Clone NameMSMg01-362K13
Chromosome8 (Build37)
Map Location 84,267,718 - 84,377,357
singlet/doubletdoublet
Overlap geneInpp4b
Upstream geneGab1, LOC666237, LOC100039496, LOC234501, LOC100039518, Usp38, EG70793, LOC236010, LOC384852
Downstream geneLOC671182, Il15, EG666564, LOC675800, EG666289, Zfp330
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-362K13.T7 (MSMg01no362_k13.b1)MSMg01-362K13.TJ (MSMg01no362_k13.g1)
ACCAG471291AG471292
length739756
length of high quality
(start - end)		614 (48 - 661)492 (77 - 568)
definitionCHROMAT_FILE: MSMg01no362_k13.b1 PHD_FILE: MSMg01no362_k13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:07 2005CHROMAT_FILE: MSMg01no362_k13.g1 PHD_FILE: MSMg01no362_k13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:07 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,267,718 - 84,268,328)(84,376,867 - 84,377,357)
sequence
NTTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTCCTTATTTATAGCAAGCAATAGAATGAGAATTTGTGCAGAC
ATTCGTAAATTAGGTTGTATTACTTGTATCATTAAATTTTACTTTTTAAA
CATTGTTCTAGTAAAAAAATTTCCATAACACAGTAATTATTTTCCTCAAC
TAGTACTAATAAAGAAATAATCTGGGCTTGCTGCCTAGATCCATTTGGTG
CCACAATGGTGTATATTTTCTTTTGAACTAAACTTTTTAAATTAACACAT
GCACACATTCAAATTGGTATGCTGAGATGAGATATATTTTACATGTCAGT
AGATATATTTTCTGTAGATTGGGAGAGAGATTTAAAAATATAGATATCTG
ATCTGAGTTTTAATAATTTGAAGTCTCAATTTTTTAGGCTCATACACTTT
CATTAATTATGTAGCAAATTTGTAGCCTGTTGTCAATGTATTTTATTTTG
AGTATATCTTAATGTGATAACAATTATATATAATTAATATTTTAAGCACC
CTTTAAAGGGTATATGTCAACTAATCATTCTGGATTGGAATTTCCTAAGT
ATTGAGAAACAGGCAAACTTGTGAAAACTCAAGAAATACTCATGGAACAG
CTGAAAAGCTGTACTTTGCTTCTTTAAGTTTTGAGATGCTTTTGGGCACA
GAAAGAAGCTGTTTTTAGGAAGCAAGTGAGAGGCAAAGG

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGCCAGATGGACAGACAGGTG
GAATGGCTATTTTTAGGCATGAGCTATGGACGCGCCATAAGGCACAGGTG
CAAGCAAGCTTGGTGACCACAACCACTGACTGTCTCGTCTGCTGGACCAG
GAGCCCCTTCACATGCAGCTCTTTAACTGATCAGTATCAGAGACAGCCCA
ACAACAGAAACAGAGGGCATGTACACAGAATGCCAGGGACAATAACCCTG
AGACAAGCAGTCCCACTGCAATTGTTAGCCCAGGTTTTATCTCAGGGGAC
ACTGTCAGAGCTTTCCAAAATAAGGCACATCGAACCTTAGTATTGGTAAT
GGCCTGCCAAATGAAAACAGACCCCATGCCCCCGTCTTCTAATCCCTCTA
TGCCCCCAAAACTAGAACTGATAGCTTCTTTATCATTGCACATATGTATG
TATAAATGTATGAATGTATTATAGTGATACAGAGTTATATTTGTTTATAT
ATATGTATATTTATATGNATAANAAGGTTTTCAGTTANNAAAGTTTATTT
TATTCAAAACCTAATTTTATCTANGGAATCCATGTTGGATTATATGGAAT
ACCTAATTTCCACTTTTTGTTATTTTTCCTTATTTACTTGCATCCCAATA
AGGAATAAAAATAACTTTCCCCTTTTCTTTCTTCTATAAAACCTATGCCC
CCGTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no362_k13.b1 MSMg01no362_k13.b1 CHROMAT_FILE:
MSMg01no362_k13.b1 PHD_FILE: MSMg01no362_k13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:07 2005
         (614 letters)



>mm_chr8_84267515_84268528
          Length = 1014

 Score = 1181 bits (611), Expect = 0.0
 Identities = 611/611 (100%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcttccttatttatagcaagcaatagaatgagaatttgtgcagacattcgtaaat 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttccttatttatagcaagcaatagaatgagaatttgtgcagacattcgtaaat 263

                                                                       
Query: 64  taggttgtattacttgtatcattaaattttactttttaaacattgttctagtaaaaaaat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 taggttgtattacttgtatcattaaattttactttttaaacattgttctagtaaaaaaat 323

                                                                       
Query: 124 ttccataacacagtaattattttcctcaactagtactaataaagaaataatctgggcttg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttccataacacagtaattattttcctcaactagtactaataaagaaataatctgggcttg 383

                                                                       
Query: 184 ctgcctagatccatttggtgccacaatggtgtatattttcttttgaactaaactttttaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctgcctagatccatttggtgccacaatggtgtatattttcttttgaactaaactttttaa 443

                                                                       
Query: 244 attaacacatgcacacattcaaattggtatgctgagatgagatatattttacatgtcagt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 attaacacatgcacacattcaaattggtatgctgagatgagatatattttacatgtcagt 503

                                                                       
Query: 304 agatatattttctgtagattgggagagagatttaaaaatatagatatctgatctgagttt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 agatatattttctgtagattgggagagagatttaaaaatatagatatctgatctgagttt 563

                                                                       
Query: 364 taataatttgaagtctcaattttttaggctcatacactttcattaattatgtagcaaatt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 taataatttgaagtctcaattttttaggctcatacactttcattaattatgtagcaaatt 623

                                                                       
Query: 424 tgtagcctgttgtcaatgtattttattttgagtatatcttaatgtgataacaattatata 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tgtagcctgttgtcaatgtattttattttgagtatatcttaatgtgataacaattatata 683

                                                                       
Query: 484 taattaatattttaagcaccctttaaagggtatatgtcaactaatcattctggattggaa 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 taattaatattttaagcaccctttaaagggtatatgtcaactaatcattctggattggaa 743

                                                                       
Query: 544 tttcctaagtattgagaaacaggcaaacttgtgaaaactcaagaaatactcatggaacag 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tttcctaagtattgagaaacaggcaaacttgtgaaaactcaagaaatactcatggaacag 803

                      
Query: 604 ctgaaaagctg 614
           |||||||||||
Sbjct: 804 ctgaaaagctg 814


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1014
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1004
Effective search space:   606416
Effective search space used:   606416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no362_k13.g1 MSMg01no362_k13.g1 CHROMAT_FILE:
MSMg01no362_k13.g1 PHD_FILE: MSMg01no362_k13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:07 2005
         (492 letters)



>mm_chr8_84376743_84377634
          Length = 892

 Score =  949 bits (491), Expect = 0.0
 Identities = 491/491 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcagccagatggacagacaggtggaatggctatttttaggcatgagctatggacgcgcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 ttcagccagatggacagacaggtggaatggctatttttaggcatgagctatggacgcgcc 556

                                                                       
Query: 61  ataaggcacaggtgcaagcaagcttggtgaccacaaccactgactgtctcgtctgctgga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 ataaggcacaggtgcaagcaagcttggtgaccacaaccactgactgtctcgtctgctgga 496

                                                                       
Query: 121 ccaggagccccttcacatgcagctctttaactgatcagtatcagagacagcccaacaaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 ccaggagccccttcacatgcagctctttaactgatcagtatcagagacagcccaacaaca 436

                                                                       
Query: 181 gaaacagagggcatgtacacagaatgccagggacaataaccctgagacaagcagtcccac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 gaaacagagggcatgtacacagaatgccagggacaataaccctgagacaagcagtcccac 376

                                                                       
Query: 241 tgcaattgttagcccaggttttatctcaggggacactgtcagagctttccaaaataaggc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 tgcaattgttagcccaggttttatctcaggggacactgtcagagctttccaaaataaggc 316

                                                                       
Query: 301 acatcgaaccttagtattggtaatggcctgccaaatgaaaacagaccccatgcccccgtc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 acatcgaaccttagtattggtaatggcctgccaaatgaaaacagaccccatgcccccgtc 256

                                                                       
Query: 361 ttctaatccctctatgcccccaaaactagaactgatagcttctttatcattgcacatatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 ttctaatccctctatgcccccaaaactagaactgatagcttctttatcattgcacatatg 196

                                                                       
Query: 421 tatgtataaatgtatgaatgtattatagtgatacagagttatatttgtttatatatatgt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 tatgtataaatgtatgaatgtattatagtgatacagagttatatttgtttatatatatgt 136

                      
Query: 481 atatttatatg 491
           |||||||||||
Sbjct: 135 atatttatatg 125


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space:   425124
Effective search space used:   425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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