XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
ATAAATATTATTTTCCTGGGACACTGAAAGAAGGTTAAAGAATTCATCAC
ACTACCATTTAGAAAAAAAAAACCACTTTTTGGAAGATGGGGTTTATTGA
ACTGCTAAATAATAAATTTATGAGACACAAATCCAATAATTATCAGTACC
AATACTTTTCTTATATTGATTAATATTATTTTTCATTGAAAATTTCTGAA
AGTACATTAATACATATTCCCAACTTACACTTAACCATTGAAATAAGGAG
CCAATAACCAGTATTTGCAGGATTGAGGCAAATAAAAATATTTTATATCT
AGGAAACTACTTTAAGTAAAAATTATAAAAACAGCAATATTATCACAATT
TAAATGATAAGTTCTAAAATGCTTCAATTTGATAATACTTAAGTCTGAAG
TAAACACATTTTTCCTTCATGTATTACTGTTTTACAAGTACAAAGAGAAA
GCTTTAGACTGTAACATTCATATAATCCATGTGCTTTAAAAATCAAAGTT
ATTTTATCAAGATAGTATCTAAATGGAAGCAGCGTTTGTCAAATGGGATT
ACATGAAGTGCTGAGGATCTAAGTAAAGGATGTTCATCTGCTGGCCATCA
GAGCTAATGATTTAATGCTTGCCTTTGTCATCTTAACATGTAACCACAGA
CCTGTCAGCAATAAAGTCACAGCCCATACTCANGAAGTCAATTGGCAGA

CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAAGACCTGGAAGCAGAAAGCAAATAAA
TGTTGCTTCTTGGCTCACCCTTCAAGCCTCCACAGAATCAAGCACCTCCC
CTCCCACTGATGGGGCAGTCCTCTGTTACATATGTAGCTTGAGTCATGGA
CTGGCCAATGTATTCTCTTTGGTGATTTAGCCCATGGGAGCTCTGAAGGG
TCCTGTTAGTTGATACTGTTGTTCTTCCTATGGGGTTATAATCTCCTTCA
GCTCTTCCCCTAACTCTTTTGTTGGTGCCCCGTGGCTCAGTCCAGTGGTT
GGCTGTGAGTATCTGCACCTGTCTTGGGGGCTGGCAGAGCCCCTCATAGG
ACAGCCATACCAGGATCCTGTCTATAAACACCTTCTGGCATCAGCAATTG
TGTCTGCAGATGGGGTGGATCCCTAGGTGGGGCAGTCTCTGTGTGGCCTT
TTCTTCAGTTTCTGCTCCATTTTTGTCCTTGCATTTCCTTTATACAGGGA
CAACTCTGGGCTACATATTTTGAGATAAGTTTGTGACTGTATCCCTCTAC
TAGGAGACAGATCTATCTCCCACCATTGGGCATTTCAGCTAAAGCCTTTC
TCTTTGGGGTCCGGGCAGCTTCTCAATTCCCGGTACCTGGAATTCCTAAC
GGGTTTCTCAGTTCCTCTCCTCCAATGGCCTCTAGCCCATATTTTTTCTC
TTATAACCC

Query= MSMg01no363_a05.b1 MSMg01no363_a05.b1 CHROMAT_FILE:
MSMg01no363_a05.b1 PHD_FILE: MSMg01no363_a05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:35 2005
         (627 letters)



>mm_chr8_53156746_53157773
          Length = 1028

 Score = 1183 bits (612), Expect = 0.0
 Identities = 621/624 (99%), Gaps = 1/624 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaataaatattattttcctgggacactgaaagaaggttaaagaattcatcacact 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828 gaattcaataaatatcattttcctgggacactgaaagaaggttaaagaattcatcacact 769

                                                                       
Query: 65  accatttag-aaaaaaaaaaccactttttggaagatggggtttattgaactgctaaataa 123
           ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 768 accatttagaaaaaaaaaaaacactttttggaagatggggtttattgaactgctaaataa 709

                                                                       
Query: 124 taaatttatgagacacaaatccaataattatcagtaccaatacttttcttatattgatta 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 taaatttatgagacacaaatccaataattatcagtaccaatacttttcttatattgatta 649

                                                                       
Query: 184 atattatttttcattgaaaatttctgaaagtacattaatacatattcccaacttacactt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 atattatttttcattgaaaatttctgaaagtacattaatacatattcccaacttacactt 589

                                                                       
Query: 244 aaccattgaaataaggagccaataaccagtatttgcaggattgaggcaaataaaaatatt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 aaccattgaaataaggagccaataaccagtatttgcaggattgaggcaaataaaaatatt 529

                                                                       
Query: 304 ttatatctaggaaactactttaagtaaaaattataaaaacagcaatattatcacaattta 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 ttatatctaggaaactactttaagtaaaaattataaaaacagcaatattatcacaattta 469

                                                                       
Query: 364 aatgataagttctaaaatgcttcaatttgataatacttaagtctgaagtaaacacatttt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 aatgataagttctaaaatgcttcaatttgataatacttaagtctgaagtaaacacatttt 409

                                                                       
Query: 424 tccttcatgtattactgttttacaagtacaaagagaaagctttagactgtaacattcata 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 tccttcatgtattactgttttacaagtacaaagagaaagctttagactgtaacattcata 349

                                                                       
Query: 484 taatccatgtgctttaaaaatcaaagttattttatcaagatagtatctaaatggaagcag 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 taatccatgtgctttaaaaatcaaagttattttatcaagatagtatctaaatggaagcag 289

                                                                       
Query: 544 cgtttgtcaaatgggattacatgaagtgctgaggatctaagtaaaggatgttcatctgct 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 cgtttgtcaaatgggattacatgaagtgctgaggatctaagtaaaggatgttcatctgct 229

                                   
Query: 604 ggccatcagagctaatgatttaat 627
           ||||||||||||||||||||||||
Sbjct: 228 ggccatcagagctaatgatttaat 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1028
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1018
Effective search space:   628106
Effective search space used:   628106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)