BAC Information

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BAC

Clone NameMSMg01-363F07
Chromosome8 (Build37)
Map Location 19,976,184 - 19,976,624
singlet/doubletsinglet
Overlap genenone
Upstream geneDefb40, Defb37, Defb38, Defb39, Defb12, Defb34, EG546038, Spag11, Defb14, Defb4, EG654452, Defb6, EG574081, Defb5, Defb3, Defb54-ps, LOC100040504, LOC100040514, Defb8, LOC100040528, LOC100041511, Defb7, LOC670326, LOC100040561, LOC624198, EG665730, 4930467E23Rik, LOC100041567, LOC547150, LOC100040599
Downstream geneEG665822, 6820431F20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-363F07.T7 (MSMg01no363_f07.b1)MSMg01-363F07.TJ (MSMg01no363_f07.g1)
ACCAG471796AG471797
length733771
length of high quality
(start - end)
534 (42 - 575)436 (81 - 516)
definitionCHROMAT_FILE: MSMg01no363_f07.b1 PHD_FILE: MSMg01no363_f07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:59:00 2005CHROMAT_FILE: MSMg01no363_f07.g1 PHD_FILE: MSMg01no363_f07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:59:00 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCCCACAGCTTGAGAATCATCCATGAGAAATGCACATAGCTGATAGTCAA
ATACCGCAGGGATAGTGTGGGTAGCACTGGAGTGCAGACATACCTGTGAG
CACAGGTAAGACTGGAGGGACCTGCCCTGAACCCTCAGGACACAGAATCG
GAAGAACAGCCATGGACAGGTCCTTCTGGTTTCTGTCTGCACCCAGGAGC
TGACACTGTGCCACAGCTTTTCATACCCAAATTCCTCTCAGAGAGACCTG
GTCTCCCAGGAGTACTGACACACAGGCTTGCAGGAGGGACAAGTCACAGT
CAGAGACAGTGAGACCAGCTAGCGCCAGAGATAACCAGATGTCAAGAGGC
AAGGGCAAAAGCATAAGCAACAGAAACCAAGCCTACTTGGCATCATCAGA
ACCCAGTTCTCCCACTACAGCGAGCCCTGGATACCCCAACACACCACAAA
AGCAAGTCTCTGATTTAAAATCACATCACATGATGATGATAGAGGACTTT
AAGAAGGATATAAATAACTCCCTTAAAAATACAGGAAAACACCGTTAACC
AGAAGTCCTTTAAGAGGAATCATTATACTCCCTTAAAGAATACAGGAAAA
TACACCAACAGGTGAAGAATTTGACATAACCATCCTCCAGGATCTAAAAT
GGGATTAGAAACCTAAAGAATCCCCTTTTTTGC
NCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGCTGTAAAAGAATCCAG
ATGTTCTAAGATGATTTGGGGGGGATGCCAAAAGGATGCCAGATTTTTAC
AAAGACCTGCCAAGTCTTGATGTGTGCTCCTTAGGAACCATTCTGGAAGA
GATGCTGGGAAGTGCCCCCCCCGCCACTCCCCCTCCACCCCCCCAAGCAA
GATATTCGTGAGAAAGGGAGGAAGACAGAGTTGGGTGGACAGAGGAGCTG
AGCCTCAATGTAGTAGCCACTGATTTTTCAGCCAGTTCTACAGGAGCTGG
GGAGGCTCCAAACTGTGAGGAGGGGGTCCTTAGTACCACCTGTGTCAGCT
TTACTCACTACAGGCTCTCATCTAAGACAGTGGTTGGAGTTTTAACACAG
CTCCTCCTGTTGTGAGGACTCTCAACCATAAAATTATCTTGTTGCAGTTC
TCTCGACAGCTGTCCCTCTTTATAAGTTGGCACTCCGCAAGGATGAAGCC
ATGTTCAGCTCCAGTGCCAAGACTGTGAAGCCAATGGGGGAAAACTCGGA
TGACTTCCCAGTCTGGAATCCCCTCAGGGGTGGCTCGAATTGGAAAAGAA
CCCTCAATGTTTTGGTCTCTTCTGCCCCAAAACCACTCCCTCTCCCCCCT
TCAATTTGAATTTTGTGGGTGGGCTTTAACGCTTCCAAAATTTTTGGTAC
CATCTCTCCTATTTTTTAACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no363_f07.g1 MSMg01no363_f07.g1 CHROMAT_FILE:
MSMg01no363_f07.g1 PHD_FILE: MSMg01no363_f07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:00 2005
         (436 letters)



>mm_chr8_19975984_19976824
          Length = 841

 Score =  779 bits (403), Expect = 0.0
 Identities = 430/441 (97%), Gaps = 5/441 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcagctgtaaaagaatccagatgttctaagatgatttgggggggatgccaaaaggatgcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcagctgtaaaagaatccagatgttctaagatgatttgggggggatgccaaaaggatgcc 260

                                                                       
Query: 61  agatttttacaaagacctgccaagtcttgatgtgtgctccttaggaaccattctggaaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agatttttacaaagacctgccaagtcttgatgtgtgctccttaggaaccattctggaaga 320

                                                                       
Query: 121 gatgctgggaagtgc-cccccccgccactccccctccaccccc----ccaagcaagatat 175
           ||||||||||||||| |||||||||||||||||||||||||||    |||||||||||||
Sbjct: 321 gatgctgggaagtgcacccccccgccactccccctccaccccctcccccaagcaagatat 380

                                                                       
Query: 176 tcgtgagaaagggaggaagacagagttgggtggacagaggagctgagcctcaatgtagta 235
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 381 tcgtgagaaagggaggaagacagagttgggtggacagaggagctgagcctcaatgttgta 440

                                                                       
Query: 236 gccactgatttttcagccagttctacaggagctggggaggctccaaactgtgaggagggg 295
           ||||||||  | | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gccactgaggtctaagccagttctacaggagctggggaggctccaaactgtgaggagggg 500

                                                                       
Query: 296 gtccttagtaccacctgtgtcagctttactcactacaggctctcatctaagacagtggtt 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtccttagtaccacctgtgtcagctttactcactacaggctctcatctaagacagtggtt 560

                                                                       
Query: 356 ggagttttaacacagctcctcctgttgtgaggactctcaaccataaaattatcttgttgc 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggagttttaacacagctcctcctgttgtgaggactctcaaccataaaattatcttgttgc 620

                                
Query: 416 agttctctcgacagctgtccc 436
            ||||||||||||||||||||
Sbjct: 621 ggttctctcgacagctgtccc 641


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 841
Length adjustment: 9
Effective length of query: 427
Effective length of database: 832
Effective search space:   355264
Effective search space used:   355264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)