BAC Information

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BAC

Clone NameMSMg01-363F24
Chromosome8 (Build37)
Map Location 23,443,314 - 23,618,168
singlet/doubletdoublet
Overlap geneTpte, Slc25a15, LOC547006, Mrps31, AI316807, Slc20a2
Upstream geneLOC100041811, Defcr-rs1, LOC100040668, LOC100041843, LOC100040678, EG665927, LOC100040693, Defcr20, LOC100041890, LOC100041895, EG626682, LOC100040706, EG665956, LOC635093, Defcr26, Defcr17, LOC100041952, Defcr-ps1, AY761184, LOC100040729, Defcr24, LOC100040739, Defb1, Defb50, Defb2, Defb10, Defb9, Defb11, Defb15, Defb35, Defb13, C86695, Ccdc70, Atp7b, Alg11, Nek5, Nek3, Ckap2, Vps36, Rpl30-ps2, Thsd1
Downstream geneLOC100040803, Vdac3, Dkk4, Polb, Ikbkb, Plat, Ap3m2, Myst3, LOC100042253, Ank1, Nkx6-3, Agpat6, Gins4, Golga7, Sfrp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-363F24.T7 (MSMg01no363_f24.b1)MSMg01-363F24.TJ (MSMg01no363_f24.g1)
ACCAG471829AG471830
length792749
length of high quality
(start - end)		487 (33 - 519)464 (85 - 548)
definitionCHROMAT_FILE: MSMg01no363_f24.b1 PHD_FILE: MSMg01no363_f24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:59:03 2005CHROMAT_FILE: MSMg01no363_f24.g1 PHD_FILE: MSMg01no363_f24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:59:04 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,617,689 - 23,618,168)(23,443,314 - 23,443,777)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGGATCCGCGGAATTCAGTT
CTATTTTCAATTCTTACATATTTTTCCTACTGAATGCACCACTGAAATTT
TTCTCTCATTGTTGACACCGTATGTCATTTGTATTTAAAAATCAGGCAAC
TCATAACCTCAAAGAAGTCTTTACATACAGTTTGGCAAAATGGGGACATG
GCATTCACGACACTAATCCCGGGTTTGTCTCTGTCTTTGCTTGTAGATGG
AGAAATGGGCGCACAACTGTTTCATTAAACATCAACATTCCTAAAGCGGT
GTACTTTACACGGTAACTTACAAGGGGGTGTCTTTCTGGTTCTGATATAA
ACAAGTTGCTTGACTTGAAATTGTTCTACTTTAAGTGTAAACGTAGTTCA
AACTAAGCAAGGTGACGGGTTTAATTTAAAGTAATACTGAAAGTAACACT
GAAATTCCGTTTGCTTCAGTCTAGATATAAGTTGGGACTGACCAAACTGA
AATGCAGTTAGGTGCTTTAGATACAATGGATAACTAACTCAGTCAACCGG
AACACCCTTTAAGTCACCCTCTGAAAACCTCCCTATAAAGTTTTTTTCCT
TAAGAAAAAAAAAGGCTATTTTCTAAGAAAAAATTTTTTCTTTTATAAAA
AGGTTTCCATGTATAAGGTTTAACAAAGTTACACTTGGTTAACCCCTTGG
GGCTGGCCGTGGTTCCCCCTCTAAAAGGGATTTAATCTTTTTTTTGGTTG
CCCCCCCTTTTGTCATCACCCCCCAAAAAATTCGGTTGAAAC

TTTCCCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTCTTTACTTTGAAC
TACAGAAGCATGGTCAGCTTGAACAGCTATGTTACTAAACAACTCTACCC
CAGCACGGGTGATAACCCTCAAAGTCGGCAAGCTAAGCCTCAACCCCAGC
CAACCTTCATATCCCATCAAACATAATGTGTTTGGGACAGAATTACATGC
AGCTGACAGGGTGGGGACCGTGGACCTGGAAGTGGGTTAGAATCTCAGGA
GAATATAGAATAACACACATAATTCTCCCTGGGACTAGAGTAGGGCTGAA
GATAGAGTCTGTCATGAATAACTTGTGCGTTGAAGCCTTACCATCTCCCC
GCTCCAGGAGACGGCGCTATTTCTCTGACGTACTGAACACCCTAGACGCT
GTGGTCATCGGTGTGACTGTGGTTGTGGCTGTCATTTATGCACTTTATGA
CAAACACTTTCTCAGAGATATCCCAAGGTATGATACATTTGGCTTACCTC
TCNAAGCTCCCCTTCCACTCTTCTGGGTTGTTGTTTCTGTGATGTTGTTG
TTGAATTCCCTGGGTTTATTTAAAATTTTAACTTTGAACCCTTCGGGAAT
ATAACCTGGTAAAAGGCTTAAAAGGGGCATGGTTATCCATAAAAATAACT
TCCGATTTTCTTTTGAAATTAAAAAGTGCCGTGTTTTTTATTGTCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no363_f24.b1 MSMg01no363_f24.b1 CHROMAT_FILE:
MSMg01no363_f24.b1 PHD_FILE: MSMg01no363_f24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:03 2005
         (487 letters)



>mm_chr8_23617482_23618368
          Length = 887

 Score =  890 bits (460), Expect = 0.0
 Identities = 475/480 (98%)
 Strand = Plus / Minus

                                                                       
Query: 8   ggaattcagttctattttcaattcttacatatttttcctactgaatgcaccactgaaatt 67
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 ggaattcagttctattttcaattcttacatatttttcctactgaatgcaccactgaaatt 628

                                                                       
Query: 68  tttctctcattgttgacaccgtatgtcatttgtatttaaaaatcaggcaactcataacct 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 tttctctcattgttgacaccgtatgtcatttgtatttaaaaatcaggcaactcataacct 568

                                                                       
Query: 128 caaagaagtctttacatacagtttggcaaaatggggacatggcattcacgacactaatcc 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 caaagaagtctttacatacagtttggcaaaatggggacatggcattcacgacactaatcc 508

                                                                       
Query: 188 cgggtttgtctctgtctttgcttgtagatggagaaatgggcgcacaactgtttcattaaa 247
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 507 cgggtttgtctctgtctttgcttgtagatggagaaatgggcacacaactgtttcattaaa 448

                                                                       
Query: 248 catcaacattcctaaagcggtgtactttacacggtaacttacaagggggtgtctttctgg 307
           ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct: 447 catcaacattcctaaagcggtgtactttacacggtaactgacaagggggtttctttctgg 388

                                                                       
Query: 308 ttctgatataaacaagttgcttgacttgaaattgttctactttaagtgtaaacgtagttc 367
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 387 ttctgatataaacaagttgcttaacttgaaattgttctactttaagtgtaaacgtagttc 328

                                                                       
Query: 368 aaactaagcaaggtgacgggtttaatttaaagtaatactgaaagtaacactgaaattccg 427
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 aaactaagcaaggtgacgggtttaatttaaagtaatactgaaagtaacactgaaattccg 268

                                                                       
Query: 428 tttgcttcagtctagatataagttgggactgaccaaactgaaatgcagttaggtgcttta 487
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 267 tttgcttcagtctagatataagttgggactgaccaaactgaaaggcagttaggtgcttta 208


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 887
Length adjustment: 10
Effective length of query: 477
Effective length of database: 877
Effective search space:   418329
Effective search space used:   418329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no363_f24.g1 MSMg01no363_f24.g1 CHROMAT_FILE:
MSMg01no363_f24.g1 PHD_FILE: MSMg01no363_f24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:04 2005
         (464 letters)



>mm_chr8_23443114_23443977
          Length = 864

 Score =  859 bits (444), Expect = 0.0
 Identities = 459/464 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctctttactttgaactacagaagcatggtcagcttgaacagctatgttactaaacaact 60
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctctttgctttgaactacagaagcatggtcagcttgaacagctatgttactaaacaact 260

                                                                       
Query: 61  ctaccccagcacgggtgataaccctcaaagtcggcaagctaagcctcaaccccagccaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctaccccagcacgggtgataaccctcaaagtcggcaagctaagcctcaaccccagccaac 320

                                                                       
Query: 121 cttcatatcccatcaaacataatgtgtttgggacagaattacatgcagctgacagggtgg 180
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttcatatcccatgaaacataatgtgtttgggacagaattacatgcagctgacagggtgg 380

                                                                       
Query: 181 ggaccgtggacctggaagtgggttagaatctcaggagaatatagaataacacacataatt 240
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 381 ggaccgtggacctggaagtgggttagaatctcaggagaatatagaatagcacacataatt 440

                                                                       
Query: 241 ctccctgggactagagtagggctgaagatagagtctgtcatgaataacttgtgcgttgaa 300
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctccatgggactagagtagggctgaagatagagtctgtcatgaataacttgtgcgttgaa 500

                                                                       
Query: 301 gccttaccatctccccgctccaggagacggcgctatttctctgacgtactgaacacccta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gccttaccatctccccgctccaggagacggcgctatttctctgacgtactgaacacccta 560

                                                                       
Query: 361 gacgctgtggtcatcggtgtgactgtggttgtggctgtcatttatgcactttatgacaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gacgctgtggtcatcggtgtgactgtggttgtggctgtcatttatgcactttatgacaaa 620

                                                       
Query: 421 cactttctcagagatatcccaaggtatgatacatttggcttacc 464
           ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 621 cactttctcagagatatcccaaggtatgaaacatttggcttacc 664


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 864
Length adjustment: 10
Effective length of query: 454
Effective length of database: 854
Effective search space:   387716
Effective search space used:   387716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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