BAC Information

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BAC

Clone NameMSMg01-363K02
Chromosome8 (Build37)
Map Location 63,204,845 - 63,406,693
singlet/doubletdoublet
Overlap geneLOC100040679, 2700029M09Rik, Clcn3
Upstream geneAadat, Mfap3l
Downstream geneB230317F23Rik, Nek1, Sh3rf1, EG664975, Cbr4, Palld, LOC100040872
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-363K02.T7 (MSMg01no363_k02.b1)MSMg01-363K02.TJ (MSMg01no363_k02.g1)
ACCAG472022AG472023
length740746
length of high quality
(start - end)		579 (41 - 619)509 (75 - 583)
definitionCHROMAT_FILE: MSMg01no363_k02.b1 PHD_FILE: MSMg01no363_k02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:59:24 2005CHROMAT_FILE: MSMg01no363_k02.g1 PHD_FILE: MSMg01no363_k02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:59:24 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,204,845 - 63,205,419)(63,406,188 - 63,406,693)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CTGCTCCATTTCTATAAGTTCTTAGGTAGATACACAATAATTAAAACAAA
CAGTAAATCCCTTTTCTTAAAGAAAACAAAAGAATCCCTAAACTGTGTCT
ATAGTAGAACAATTTGTAAAATAACTTTAAGATCATTTTGTGCATTTTAA
ATCCCTTAAGAGCTAATTCCAGTTGCAAAAATGATTAACAGCAACAACAA
CAAAAAAAAATAGCTGTCACTTTTAGATTTATTAAACCCTTTGTAAACAC
AACAACCATTCACTCATTAACACATTCAATATATCAGAAGAAGGAATGAG
CTGTCAAACCACATACCCACCACAAGATTTTTATAATTGAAGGTTATTAG
CAGTTGGTAGGCATTGGCAAGGAACCCTTACAGCGTTTCTAAAATTTACA
TACAAGCATGCACAGCTTTTTTTTTCTCAACACTTTTAATAGTTACCCTA
AGCAAAATAGTATCATTTAAAAAATAAAAATGGTATTAGCTCTCGCTATA
TTAGCAAAGATTTAGAAGCTAAGGGTAAATTGGAGAAGGGTAGGCAAGAC
TCTTCAGTCCATGGGAAACCAGATAGGATTTAAGTTGTCCCCAGATATTC
AATGGCCTCCCTTAGTGAGAGAGTGTTTCCTGTTGATTTGTTGCTCTTTC
CTTCCAACAAAATTGGCTTCAGCTGAAGGATCCAAGGAGN

CCCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGGAAACATCACCTGACATATGCTGT
AGCTCTTTAGGAGAAGTAACATCTGCTGTTTCTACCATTTGTGAAAGTAA
AACGGAGGGACAATCTTGGGAGCTTACTGCTTCAGATGGAACAAATTTGG
TTTTATGGGAAATACCTGTCTTTCTCCCCTACCCCCTTCCATTTTACTGT
GGACTACTGAAAACTTTGTTAGAGACTAAGGATGTTTTAGGATAAAGGAT
GATAAATTTTGAGCTATTTCTCTTTGACTTAGAGAAGCTGCTTTATTCCT
TTGTTACTGAAATCTAAGAATTACTAACAAACTATTTGATATAACAGGAT
TTTGTGGTAGTTTACTCTGTGTAAGGACTTTAGCGTTTCATTAAGATACG
AATGGAGCCTATTGTTAGAAAAAAAAATTCATAGGATCTAGTTTTCAGTC
ACGTGATTAGAGAACTGTTACCTCATTAAAAGTTCTTTCCTTGCTGTCAC
AGGTCCCGTCAGGCTTGTTTATCCCCAGCAGGGCCATTGGAGCCATTGCA
GGGAGAATTGTGGGGATCGCTGTGGAGCATCTTGCCTACTATCACCACGA
CTGGTTTATCCTCAAGGAGTGGTGCGAGGTTGGGTTTTACTGCCTTCCTC
CCGGCTCTGAAGCCATGGATGGTTTCTGCTGCGAGCCTTATCAACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no363_k02.b1 MSMg01no363_k02.b1 CHROMAT_FILE:
MSMg01no363_k02.b1 PHD_FILE: MSMg01no363_k02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:24 2005
         (579 letters)



>mm_chr8_63204641_63205619
          Length = 979

 Score = 1027 bits (531), Expect = 0.0
 Identities = 564/575 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctgctccatttctataagttcttaggtagatacacaataattaaaacaaacagt 64
           ||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctgctccaggtgtataagttcttaggtagatacacaataattaaaacaaacagt 264

                                                                       
Query: 65  aaatcccttttcttaaagaaaacaaaagaatccctaaactgtgtctatagtagaacaatt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaatcccttttcttaaagaaaacaaaagaatccctaaactgtgtctatagtagaacaatt 324

                                                                       
Query: 125 tgtaaaataactttaagatcattttgtgcattttaaatcccttaagagctaattccagtt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgtaaaataactttaagatcattttgtgcattttaaatcccttaagagctaattccagtt 384

                                                                       
Query: 185 gcaaaaatgattaacagcaacaacaacaaaaaaaaatagctgtcacttttagatttatta 244
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 385 gcaaaaatgattaacagcaacaacaacaacaaaaaatagctgtcacttttagatttatta 444

                                                                       
Query: 245 aaccctttgtaaacacaacaaccattcactcattaacacattcaatatatcagaagaagg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaccctttgtaaacacaacaaccattcactcattaacacattcaatatatcagaagaagg 504

                                                                       
Query: 305 aatgagctgtcaaaccacatacccaccacaagatttttataattgaaggttattagcagt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aatgagctgtcaaaccacatacccaccacaagatttttataattgaaggttattagcagt 564

                                                                       
Query: 365 tggtaggcattggcaaggaacccttacagcgtttctaaaatttacatacaagcatgcaca 424
           ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 565 tggtacgcattggtaaggaacccttacagcgtttctaaaatttacatacaagcatgcata 624

                                                                       
Query: 425 gctttttttttctcaacacttttaatagttaccctaagcaaaatagtatcatttaaaaaa 484
           |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gcttttttttccttaacacttttaatagttaccctaagcaaaatagtatcatttaaaaaa 684

                                                                       
Query: 485 taaaaatggtattagctctcgctatattagcaaagatttagaagctaagggtaaattgga 544
           |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct: 685 taaaaatggtattagctctcactatattagcaaagatttagaagctaaggggaaattgga 744

                                              
Query: 545 gaagggtaggcaagactcttcagtccatgggaaac 579
           |||||||||||||||||||||||||||||||||||
Sbjct: 745 gaagggtaggcaagactcttcagtccatgggaaac 779


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 979
Length adjustment: 10
Effective length of query: 569
Effective length of database: 969
Effective search space:   551361
Effective search space used:   551361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no363_k02.g1 MSMg01no363_k02.g1 CHROMAT_FILE:
MSMg01no363_k02.g1 PHD_FILE: MSMg01no363_k02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:24 2005
         (509 letters)



>mm_chr8_63405988_63406896
          Length = 909

 Score =  978 bits (506), Expect = 0.0
 Identities = 506/506 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggaaacatcacctgacatatgctgtagctctttaggagaagtaacatctgctgtttcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 tggaaacatcacctgacatatgctgtagctctttaggagaagtaacatctgctgtttcta 647

                                                                       
Query: 61  ccatttgtgaaagtaaaacggagggacaatcttgggagcttactgcttcagatggaacaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 ccatttgtgaaagtaaaacggagggacaatcttgggagcttactgcttcagatggaacaa 587

                                                                       
Query: 121 atttggttttatgggaaatacctgtctttctcccctacccccttccattttactgtggac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 atttggttttatgggaaatacctgtctttctcccctacccccttccattttactgtggac 527

                                                                       
Query: 181 tactgaaaactttgttagagactaaggatgttttaggataaaggatgataaattttgagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 tactgaaaactttgttagagactaaggatgttttaggataaaggatgataaattttgagc 467

                                                                       
Query: 241 tatttctctttgacttagagaagctgctttattcctttgttactgaaatctaagaattac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 tatttctctttgacttagagaagctgctttattcctttgttactgaaatctaagaattac 407

                                                                       
Query: 301 taacaaactatttgatataacaggattttgtggtagtttactctgtgtaaggactttagc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 taacaaactatttgatataacaggattttgtggtagtttactctgtgtaaggactttagc 347

                                                                       
Query: 361 gtttcattaagatacgaatggagcctattgttagaaaaaaaaattcataggatctagttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 gtttcattaagatacgaatggagcctattgttagaaaaaaaaattcataggatctagttt 287

                                                                       
Query: 421 tcagtcacgtgattagagaactgttacctcattaaaagttctttccttgctgtcacaggt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 tcagtcacgtgattagagaactgttacctcattaaaagttctttccttgctgtcacaggt 227

                                     
Query: 481 cccgtcaggcttgtttatccccagca 506
           ||||||||||||||||||||||||||
Sbjct: 226 cccgtcaggcttgtttatccccagca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space:   448601
Effective search space used:   448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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