Query= MSMg01no363_k20.b1 MSMg01no363_k20.b1 CHROMAT_FILE:
MSMg01no363_k20.b1 PHD_FILE: MSMg01no363_k20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:28 2005
(564 letters)
>mm_chr8_9654967_9655930
Length = 964
Score = 1021 bits (528), Expect = 0.0
Identities = 552/560 (98%)
Strand = Plus / Plus
Query: 5 gaattctataccaattatccttccatagactcataatgataaaaataagtcacgctgaaa 64
||||||||||||||| |||||| |||||||||||||||||||||||||||| | ||||||
Sbjct: 205 gaattctataccaataatcctttcatagactcataatgataaaaataagtcgcactgaaa 264
Query: 65 tgttgtgacaccatttaaagattacaaaagatatttaaggatgaaaatgtcctttttgtg 124
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 265 tgttgtgacaccatttaaagattacaaaagatatttaaagatgaaaatgtcctttgtgtg 324
Query: 125 tcttgtatgttcttcatacaaaaatctgtgtagaaatggtaaatactgtctgaacagcta 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcttgtatgttcttcatacaaaaatctgtgtagaaatggtaaatactgtctgaacagcta 384
Query: 185 tagcgaagatctgagtttatttttccctcccagaatctctttaggcacacatgcttccta 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tagcgaagatctgagtttatttttccctcccagaatctctttaggcacacatgcttccta 444
Query: 245 gtatgtagataatacataactgtaacaagcccttggtatctcatagataactgtaacaag 304
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 445 gtatgtagataatacataactgtaacaagcccttggtatctcagagataactgtaacaag 504
Query: 305 cccttggtatctcagagccgtctctgcacacctagttttcttgtccacaagtgaacatca 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cccttggtatctcagagccgtctctgcacacctagttttcttgtccacaagtgaacatca 564
Query: 365 gggctcctgcttgggctcctgactccatcattagtaatttctccatcctctgacccccat 424
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 565 gggctcctgcttgggctcctgactccgtcattagtaatttctccatcctctgacccccat 624
Query: 425 gctcttcttagagaactcatcatctctctcattttagctaatctgaggttattgtatgtt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gctcttcttagagaactcatcatctctctcattttagctaatctgaggttattgtatgtt 684
Query: 485 aaccttactcatcaaactacaagacaataagtagtaggataataaatgtgcccagataac 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aaccttactcatcaaactacaagacaataagtagtaggataataaatgtgcccagataac 744
Query: 545 tgaattaaaatcgtcatgat 564
||||||||||||||||||||
Sbjct: 745 tgaattaaaatcgtcatgat 764
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space: 528516
Effective search space used: 528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no363_k20.g1 MSMg01no363_k20.g1 CHROMAT_FILE:
MSMg01no363_k20.g1 PHD_FILE: MSMg01no363_k20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:28 2005
(587 letters)
>mm_chr8_9855184_9856170
Length = 987
Score = 667 bits (345), Expect = 0.0
Identities = 418/463 (90%), Gaps = 36/463 (7%)
Strand = Plus / Minus
Query: 121 gagaggcagaggcagatggatttctgagttcgaggccagcctggtctccagagtgagttc 180
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 987 gagaggcagaggcagatggatttctgagtttgaggccagcctggtctccagagtgagttc 928
Query: 181 caggacagccggggctacacagagaaaccctgtctc---gaaaaaaccaaaccagaaaaa 237
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 927 caggacagccggggctacacagagaaaccctgtctcaaaaaaaaaaccaaaccagaaaaa 868
Query: 238 tattttattagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaaga 297
| ||| || | || ||||||||||||||||||||
Sbjct: 867 t--------------------------aaataa--ataggaagaaagaaagaaagaaaga 836
Query: 298 aagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaagag 357
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct: 835 aagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaggaaagaaagaaag----g 780
Query: 358 aaccccccaagccttgaagcaaatcaactttttccctctaagttaatgacttttggtgtt 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 779 aaccccccaagccttgaagcaaatcaactttttccctctaagttaatgacttttggtatt 720
Query: 418 ttgttctaataacatgaacctcactaatacacctgctatgcatatgctaatttttaactc 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 ttgttctaataacatgaacctcactaatacacctgctatgcatatgctaatttttaactc 660
Query: 478 ctcgcccgttattaatttacatttgagtatggctgacagacaactttgtaacttaatcat 537
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 tttgcccgttattaatttacatttgagtatggctgacagacaactttgtaacttaatcat 600
Query: 538 ctcattacagaatattcagataaaagtgtggctg-tttttttt 579
|||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 599 ctcattacagaatattcagataaaagtgtggctgatttttttt 557
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 94
Number of extensions: 30
Number of successful extensions: 30
Number of sequences better than 10.0: 1
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 987
Length adjustment: 10
Effective length of query: 577
Effective length of database: 977
Effective search space: 563729
Effective search space used: 563729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
