Query= MSMg01no363_m18.b1 MSMg01no363_m18.b1 CHROMAT_FILE:
MSMg01no363_m18.b1 PHD_FILE: MSMg01no363_m18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:38 2005
(482 letters)
>mm_chr8_79900740_79901623
Length = 884
Score = 917 bits (474), Expect = 0.0
Identities = 481/484 (99%), Gaps = 2/484 (0%)
Strand = Plus / Plus
Query: 1 gttgagtttgataactgacagcttgcctacaccaatattttaatgccatgctctagaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gttgagtttgataactgacagcttgcctacaccaatattttaatgccatgctctagaaaa 260
Query: 61 gtaaagtgaatattcaaattacacacatatggaagattttaaagagaaacttcataaaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtaaagtgaatattcaaattacacacatatggaagattttaaagagaaacttcataaaca 320
Query: 121 agagtgacatacaaatttagttttaacataatgactatttaaaaaacagcaactaagatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agagtgacatacaaatttagttttaacataatgactatttaaaaaacagcaactaagatg 380
Query: 181 ttttttaag--aaaaaaaagaattactggttttgcattatagtatatatatacctcaaaa 238
||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 381 ttttttaagaaaaaaaaaagaattactgattttgcattatagtatatatatacctcaaaa 440
Query: 239 ttaggtgttatgtgtgcccatcaagaaaaacaaatgtactgggcatgtttcctccctagg 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttaggtgttatgtgtgcccatcaagaaaaacaaatgtactgggcatgtttcctccctagg 500
Query: 299 aaggggagttatttacttgagaaaattatgtaagcatatttcacgctctaaaatacttca 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaggggagttatttacttgagaaaattatgtaagcatatttcacgctctaaaatacttca 560
Query: 359 ctctcttccatatgcaagatgatctttctctgtcttctatattacccataattcataaag 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctctcttccatatgcaagatgatctttctctgtcttctatattacccataattcataaag 620
Query: 419 atgctaacataaactcctatatatgctacatggaaatattcattctaaccacataaagaa 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atgctaacataaactcctatatatgctacatggaaatattcattctaaccacataaagaa 680
Query: 479 aacc 482
||||
Sbjct: 681 aacc 684
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 884
Length adjustment: 10
Effective length of query: 472
Effective length of database: 874
Effective search space: 412528
Effective search space used: 412528
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no363_m18.g1 MSMg01no363_m18.g1 CHROMAT_FILE:
MSMg01no363_m18.g1 PHD_FILE: MSMg01no363_m18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:38 2005
(521 letters)
>mm_chr8_80121629_80122550
Length = 922
Score = 948 bits (490), Expect = 0.0
Identities = 503/508 (99%), Gaps = 3/508 (0%)
Strand = Plus / Minus
Query: 1 tccaggacacccagggctatacagagaaaccctgctcccccccc--aaaaaaaaagaaaa 58
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct: 508 tccaggacacccagggctatacagagaaaccctgcccccccccccaaaaaaaaaagaaaa 449
Query: 59 aagaaagaaatacttgactgagtgaatgcaaaagaagtggcttgtcatgttttgaagaag 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 aagaaagaaatacttgactgagtgaatgcaaaagaagtggcttgtcatgttttgaagaag 389
Query: 119 tgaaaaaaaattttgaaaatgaatatagtctggaactt-aaaaaaaattgacaccttaaa 177
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 388 tgaaaaaaaattttgaaaatgaatatagtctggaacttaaaaaaaaattgacaccttaaa 329
Query: 178 taacttttaaaaagttagtagtttggaaaattagatttaaccaaaaagatgcctgatgtt 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 taacttttaaaaagttagtagtttggaaaattagatttaaccaaaaagatgcctgatgtt 269
Query: 238 tttgttgctgtttgtaggatttcataatctgcattgaaatgttctttgcggcaattgccc 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 tttgttgctgtttgtaggatttcataatctgcattgaaatgttctttgcggcaattgccc 209
Query: 298 accactatacgttctcctataaaccctatgtgcatgaagcagaggaaggctcctgctttg 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 accactatacgttctcctataaaccctatgtgcatgaagcagaggaaggctcctgctttg 149
Query: 358 actcgtttcttgcaatgtgggatgtgtccgatatcagagatgatatttctgaacaagtaa 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148 actcgtttcttgcaatgtgggatgtgtccgatatcagagatgatatttctgaacaagtaa 89
Query: 418 ggcgtgtcggtaagtaacaggctgagtgtgtatgtgcatgtggggaccacaggtgaacct 477
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88 ggcgtgtcggtaagtagcaggctgagtgtgtatgtgcatgtggggaccacaggtgaacct 29
Query: 478 caggagctgttcagatttgagttttgga 505
||||||||||||||||||||||||||||
Sbjct: 28 caggagctgttcagatttgagttttgga 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 922
Length adjustment: 10
Effective length of query: 511
Effective length of database: 912
Effective search space: 466032
Effective search space used: 466032
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
