BAC Information

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BAC

Clone NameMSMg01-363O10
Chromosome8 (Build37)
Map Location 58,306,800 - 58,307,465
singlet/doubletsinglet
Overlap genenone
Upstream geneGm392, LOC100040212, Gm1153, EG664808, EG664818, EG664834, EG664859, EG664876, LOC100040356, LOC664916
Downstream geneAdam29, Glra3, LOC664812, Hpgd, LOC664948, BC088983, Fbxo8, LOC100040431, EG624433
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-363O10.T7 (MSMg01no363_o10.b1)MSMg01-363O10.TJ (MSMg01no363_o10.g1)
ACCAG472226AG472227
length743749
length of high quality
(start - end)
469 (39 - 507)666 (79 - 744)
definitionCHROMAT_FILE: MSMg01no363_o10.b1 PHD_FILE: MSMg01no363_o10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:59:46 2005CHROMAT_FILE: MSMg01no363_o10.g1 PHD_FILE: MSMg01no363_o10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:59:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGGAATTCTTT
GTTTTTCTCTGAGCCCCATTTTTAATGGGGTTATTTGATTTTCTGGAGTC
CACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCCCTATTTGATT
TAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTCTTA
TTGACGGTGTCTTTTGCTTTGCAGGAGCTTTGCAGTTTCATGAAGTCCCA
TTTGTCAATTCTCAATCTTACAGCACAAGCCATTGCTGTTCTATTCAGAA
ATTTTTCCCCTGTATCCATATCTTCAAGGCATTTCCCTACTTTCTACTCA
ATAAGTTTCAGTGTCTCTGGTTTTATGTGGAATTCCTTAATCCACTTAGA
TTTGACCTTACTACAAGGAGATAGGAATGGATCAATTCACAATCTTCTAC
ATGATAACTGCCAGTTGTGCCAGCACCGTTTGTTGAAGATGCTGTCTTTT
TCCCACTGGATGGTTTTTGATCCCTTTTCTAAGACCAAGTGACCATATGT
GTGTGGGCTCATTTCTGGGCCTTCCTTTCTATTCCTTTGTTCTACTTGTC
TGTTACTACCCTGTTATCTTGCATCTTTTATTCTCTATTGCTCTGCTCTA
CGGCTCTTTTTCCCCGTATGTTTGCTTCCCCTATAGCCCTTTCAGCTTTT
AATAAGTATCTTTTGGTCTTTTTTGTTCTTTTTTGATTCTCTN
NCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAACAAAAACTTTTGTTTTGT
TTTGTTTTTCCTACTTTCCTTCACATCTCACTGGGACCTTCATTCACTAT
TTGCTGTTTCCCCTACCACAGCTCTTGTCATCTTTTGATGGCAGCAGAAC
TTGAGCTCTTTGGTTTTGAATACAGCTTGAACTGATAGTGTACAGATAAC
CATTAGCAGAACAGCCAAATCCTATAAAGTAAATCAGTCTAATAAATTTC
CTTTTAATATTCTGTTGCTTGCTCTCCTCTACAGAACTGATACATAGTCC
CACACACAGAACAGTCAAGAGAAGCATTTTTCTGGTTCTTTAATTTTGAT
CTTCCCAAAGCCATTTGATAAGGAGTCTATTGAATTAAAGTAGTAGGTTT
TTCTATGTTTGTGGTTTGTGACTGTTTTAGTTATCATTATAAAAGTTTTC
ATCTCTGTTATTGCATATGTTAATAATTTTATTCTTTCTGTTAATGAAGA
CTATGACTTTGCATGATGTACCTTTCTTTTTTCTCTCATGCATATATTGA
AGAATTTTATTTTCCTTCCAGAATATAAGATCTGTGAGTAAAGCTTCTAT
ATAATATTCACACAATTTTATTGAATAAATGCATATAGAATGGCTCTATT
ATGAGATAAAACATATTTTAAAACACATTTAATTTTTATTTATCAAATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no363_o10.g1 MSMg01no363_o10.g1 CHROMAT_FILE:
MSMg01no363_o10.g1 PHD_FILE: MSMg01no363_o10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:46 2005
         (666 letters)



>mm_chr8_58306600_58307665
          Length = 1066

 Score = 1265 bits (654), Expect = 0.0
 Identities = 663/666 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaacaaaaacttttgttttgttttgtttttcctactttccttcacatctcactgggacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaacaaaaacttttgttttgttttgtttttcctactttccttcacatctcactgggacc 260

                                                                       
Query: 61  ttcattcactatttgctgtttcccctaccacagctcttgtcatcttttgatggcagcaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcattcactatttgctgtttcccctaccacagctcttgtcatcttttgatggcagcaga 320

                                                                       
Query: 121 acttgagctctttggttttgaatacagcttgaactgatagtgtacagataaccattagca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acttgagctctttggttttgaatacagcttgaactgatagtgtacagataaccattagca 380

                                                                       
Query: 181 gaacagccaaatcctataaagtaaatcagtctaataaatttccttttaatattctgttgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaacagccaaatcctataaagtaaatcagtctaataaatttccttttaatattctgttgc 440

                                                                       
Query: 241 ttgctctcctctacagaactgatacatagtcccacacacagaacagtcaagagaagcatt 300
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgctctcctctacagaactgatatatagtcccacacacagaacagtcaagagaagcatt 500

                                                                       
Query: 301 tttctggttctttaattttgatcttcccaaagccatttgataaggagtctattgaattaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttctggttctttaattttgatcttcccaaagccatttgataaggagtctattgaattaa 560

                                                                       
Query: 361 agtagtaggtttttctatgtttgtggtttgtgactgttttagttatcattataaaagttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agtagtaggtttttctatgtttgtggtttgtgactgttttagttatcattataaaagttt 620

                                                                       
Query: 421 tcatctctgttattgcatatgttaataattttattctttctgttaatgaagactatgact 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcatctctgttattgcatatgttaataattttattctttctgttaatgaagactatgact 680

                                                                       
Query: 481 ttgcatgatgtacctttcttttttctctcatgcatatattgaagaattttattttccttc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttgcatgatgtacctttcttttttctctcatgcatatattgaagaattttattttccttc 740

                                                                       
Query: 541 cagaatataagatctgtgagtaaagcttctatataatattcacacaattttattgaataa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 741 cagaatataagatctgtgagtaaagcttctatataatattcacacaattttattgaatat 800

                                                                       
Query: 601 atgcatatagaatggctctattatgagataaaacatattttaaaacacatttaattttta 660
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 801 atgcatatagaatggctctattatgagctaaaacatattttaaaacacatttaattttta 860

                 
Query: 661 tttatc 666
           ||||||
Sbjct: 861 tttatc 866


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1066
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1056
Effective search space:   692736
Effective search space used:   692736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)