BAC Information

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BAC

Clone NameMSMg01-364A12
Chromosome8 (Build37)
Map Location 37,219,691 - 37,220,148
singlet/doubletsinglet
Overlap genenone
Upstream genePpp1r3b, Thex1, Mfhas1, LOC100041572, Gm501, Cldn23, LOC671641, D8Ertd82e
Downstream geneLonrf1, EG544878, 6430573F11Rik, Dlc1, LOC100042892, A730069N07Rik, AI429214, LOC666877, LOC100041616, 1700016D18Rik, LOC641121
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-364A12.T7 (MSMg01no364_a12.b1)MSMg01-364A12.TJ (MSMg01no364_a12.g1)
ACCAG472326AG472327
length790774
length of high quality
(start - end)		485 (49 - 533)458 (76 - 533)
definitionCHROMAT_FILE: MSMg01no364_a12.b1 PHD_FILE: MSMg01no364_a12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:59:58 2005CHROMAT_FILE: MSMg01no364_a12.g1 PHD_FILE: MSMg01no364_a12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:59:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNTTTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCACCTGAGGAATACCGAATGGCAGAGAAGCACTTGAAAAAA
TGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAG
ATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACA
GCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGG
TGGGAGTGCAGGCTCGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCT
CAGAAAACTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGG
GCATATATCCAGAAGATGCCCCAACAGGTAAGAAGGACACATGCTCCACT
ATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCTAG
ATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAA
TGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCC
AAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGGAACCCTTCACAA
AGAAACTCACACATATGTATTCCCTGATAAATGGGATATAGCCCCCAAAC
TAGGATACCCCAGAAATAAGAAATAATTTGGCTTACCCTTGGAACCCTCA
AAAAAGAAAAATGGAATGGGGAAACCAAGCCCCCCCCTTTAATTTGGGAA
AAAAAAACCCCTGGCAGGGGTTTCCTAAAACCCAATTTTT

NCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATCTCATTTCTGGATTATTCTTGAT
CTGGGAGACATATCCTTTTGTCTCACCATAAACAGAACATTTCACTAAGT
AGACTGTAAGCCCTGACAGTGCGGTCAGGTCCTAAACAACGATCCCAGTT
CCCTAGCCTCTTGCCTTGGACACAGTAGGTATTAAGTAAATGCTGCCTTT
CTCATCATTATGACAGAAACAAGTCGAGGTGGGGGGAGATTTCTTTGGCT
CACTGTTTCATAACAGCCTCAGTCTGGCACGAACGGAACAAAGGCACAGA
AACTGTAGCTCCTCCTATGGCTACAGATCAACCAGGCCCAGAAACAGCAT
CAGGGGTGGCCTTCAAAGGCCCACTAGTGACTCACTTCTGCCAGCCAGGT
TGCCCCTTCTAAGTCCCACAGGTTTCAAAGGGTTGAAAAAAAAAGAACTC
ATTGCTTAGTGTTACGGGAAATATTTTTAAAAATGCTCAAGGAGGGCATT
CATATTCACCCCTGAAACAATATGTTAAGACGGCTCTGGAGGTCAAATGG
TTACCGATGATACATGATATATAATTTGATCCCCCCCATCCATACCCGGT
TTGCCTGGCAAAAAAATGTCTCTCGGGGCTAGTGGCCCAAATCCCCCCTT
GTTTTGTCTATCCCCTACTTTTAGCGTATTTTGTTCTCTCCTTTTTTGAT
ACGTCCATCAGCTTCTGTCTTGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no364_a12.g1 MSMg01no364_a12.g1 CHROMAT_FILE:
MSMg01no364_a12.g1 PHD_FILE: MSMg01no364_a12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:58 2005
         (458 letters)



>mm_chr8_37219491_37220348
          Length = 858

 Score =  886 bits (458), Expect = 0.0
 Identities = 458/458 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atctcatttctggattattcttgatctgggagacatatccttttgtctcaccataaacag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atctcatttctggattattcttgatctgggagacatatccttttgtctcaccataaacag 260

                                                                       
Query: 61  aacatttcactaagtagactgtaagccctgacagtgcggtcaggtcctaaacaacgatcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacatttcactaagtagactgtaagccctgacagtgcggtcaggtcctaaacaacgatcc 320

                                                                       
Query: 121 cagttccctagcctcttgccttggacacagtaggtattaagtaaatgctgcctttctcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagttccctagcctcttgccttggacacagtaggtattaagtaaatgctgcctttctcat 380

                                                                       
Query: 181 cattatgacagaaacaagtcgaggtggggggagatttctttggctcactgtttcataaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cattatgacagaaacaagtcgaggtggggggagatttctttggctcactgtttcataaca 440

                                                                       
Query: 241 gcctcagtctggcacgaacggaacaaaggcacagaaactgtagctcctcctatggctaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcctcagtctggcacgaacggaacaaaggcacagaaactgtagctcctcctatggctaca 500

                                                                       
Query: 301 gatcaaccaggcccagaaacagcatcaggggtggccttcaaaggcccactagtgactcac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gatcaaccaggcccagaaacagcatcaggggtggccttcaaaggcccactagtgactcac 560

                                                                       
Query: 361 ttctgccagccaggttgccccttctaagtcccacaggtttcaaagggttgaaaaaaaaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttctgccagccaggttgccccttctaagtcccacaggtttcaaagggttgaaaaaaaaag 620

                                                 
Query: 421 aactcattgcttagtgttacgggaaatatttttaaaaa 458
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aactcattgcttagtgttacgggaaatatttttaaaaa 658


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 458
Length of database: 858
Length adjustment: 10
Effective length of query: 448
Effective length of database: 848
Effective search space:   379904
Effective search space used:   379904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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