BAC Information

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BAC

Clone NameMSMg01-364D19
Chromosome8 (Build37)
Map Location 11,659,361 - 11,659,778
singlet/doubletsinglet
Overlap gene1700016D06Rik
Upstream geneLOC100040008, LOC384782, LOC100040507, LOC665306, Irs2, Col4a1, Col4a2, Rab20, 0710008K08Rik, Cars2, Ing1, Ankrd10
Downstream geneEG665271, LOC665363, LOC624710, LOC665373, Arhgef7, 1700018L24Rik, LOC100040155, LOC100040175, EG434280, EG434279, Sox1, 1700094C09Rik, Tubgcp3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-364D19.T7 (MSMg01no364_d19.b1)MSMg01-364D19.TJ (MSMg01no364_d19.g1)
ACCAG472483AG472484
length784770
length of high quality
(start - end)		445 (51 - 495)418 (79 - 496)
definitionCHROMAT_FILE: MSMg01no364_d19.b1 PHD_FILE: MSMg01no364_d19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:00:16 2005CHROMAT_FILE: MSMg01no364_d19.g1 PHD_FILE: MSMg01no364_d19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:00:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTTTTTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGAT
CCGCGGAATTCTGTACCTTCCCTTTGTTGGGCTATGAACCCCAGTGGCAC
TGAAAACACAAAGCCTGTGGTGTTAGCATTCTGTCTAAGCTCCACCCCAC
AGTTAGTTACCTGGCAACAGCCAGGTAGGCCTGACCCACTATAAAGGGGG
CTCTTCCTCCCTCTCTTGCTCGTCCCTTCTTGCTCCCACTCTACCCCCTT
GCCTCTTCCCCCCTCTCTCCATGTGCTCATGGCCAGCCTCTACTCCTCTT
CTGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCCTC
TACTACCCTGTTAACTCCCCTCCCCATGCCCTGAATAAACTCTATTCTAT
ACTATATCCCCGAGGGCTGGTCCCTCAGGGAAGGGATGCCTTGGCATGGG
CCTGCTGAGACATCCCCTTCCCCCAAACTCACCATACATCCATAGAACAT
ATCCCCTCTCTCTTTATCTTTTTATAAGCACACCATGTGGAGATAAAACC
AAGAAGTGGGCCTTGGAGGCCACATTTTGAGTCACATCTGGAGCCCAATT
TGGAGGCCCAGAATTTGGGGGAAAAAAAAAGGAATCCATAGGGCCAGGGT
TCTCTCCTTCGGGGGGAAATTCCGTGGTAACCCTTGTCTAACTGAAAATT
CCCCCCCCCCACTTTTTATTCCCCATTTAATTTGGTTCTGTCTAAATTAT
TAACATTCTCAATAACTTTCTTTCTCTATGGAGA

NNTTCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTCCTTCCCCAAGTTGTCCCT
GAGCTGCTGGGACCTGATAAGAGGCTTCTCCTGGCCCCTAGGCACACAGC
ACCCATCAGGACAGCTGAATCCCTCACTGAAATTGTGTGATTCCTAACCA
CCAAGCAAAGACCAGCCTCTGTGGGGACTGGGTAAAAATGCATGAGTTAT
AAATCCATGACAGAGAGACCGAGGGACAGCCAGGTTAGGAGGAGACTTGG
AGACCATCAGAAACTAGTGTGTGACCCTAGTAACATGACAATAGGGTACC
CAGAAAAAGAAGGTGTTAAGAGTGGGAAGCAGGACTCTTGGGCTGCATGG
TGTAGAACCCTAAGCAGAACCTGAGCTAACTAGCCAGCATTAAAGAAAAG
AAGCCCCAGCTCCCAACAGCAGCAATATGGGCAGAGTCCCTCATAGCCCT
GCCAGATTGATGCTGTCAGTGATGAAGGCTAGGTGGGCCTGGGAAACCGA
AAGGCGGGCCAAGACCTCCACCCATTGTTTCCCCCTCTTGTCTCAAAACG
AAAAAGGATTCTTAAAAACACCATATTTCTGGGGGGGGGGTGATTTTATA
AAAATGTCATCCCCCCTATTGAGAAATAGGTCCTCTCTCTGTAAGAACTG
TTGTGTTAGATCCACCTATTATTTCCTATAACTCTCGGGGAGTATTTTTC
TAATATTACAGCCCTCTCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no364_d19.g1 MSMg01no364_d19.g1 CHROMAT_FILE:
MSMg01no364_d19.g1 PHD_FILE: MSMg01no364_d19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:00:16 2005
         (418 letters)



>mm_chr8_11659161_11659978
          Length = 818

 Score =  764 bits (395), Expect = 0.0
 Identities = 413/419 (98%), Gaps = 2/419 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttccttccccaagttgtccctgagctgctgggacctgataagaggcttctcctggcccc 60
           ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 618 cttccctccccaagttgtccctgagctgctgggacctgataagagccttctcctggcccc 559

                                                                       
Query: 61  taggcacacagcacccatcaggacagctgaatccctcactgaaattgtgtgattcctaac 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 tgggcacacagcacccatcaggacagctgaatccctcactgaaattgtgtgattcctaac 499

                                                                       
Query: 121 caccaagcaaagaccagcctctgtggggactgggtaaaaatgcatgagttataaatccat 180
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 caccaagcgaagaccagcctctgtggggactgggtaaaaatgcatgagttataaatccat 439

                                                                       
Query: 181 gacagagagaccgagggacagccaggttaggaggagacttggagaccatcagaaactagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 gacagagagaccgagggacagccaggttaggaggagacttggagaccatcagaaactagt 379

                                                                       
Query: 241 gtgtgaccctagtaacatgacaatagggtacccagaaaaagaaggtgttaagagtgggaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 gtgtgaccctagtaacatgacaatagggtacccagaaaaagaaggtgttaagagtgggaa 319

                                                                       
Query: 301 gca-ggactcttgggctgcatggtgtagaaccctaagcagaacctgagctaactagccag 359
           ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 gcaggga-tcttgggctgcatggtgtagaaccctaagcagaacctgagctaactagccag 260

                                                                      
Query: 360 cattaaagaaaagaagccccagctcccaacagcagcaatatgggcagagtccctcatag 418
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 cattaaagaaaagaagccccagctcccaacagcagcaatatgggcagagtccctcatag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 818
Length adjustment: 9
Effective length of query: 409
Effective length of database: 809
Effective search space:   330881
Effective search space used:   330881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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