BAC Information

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BAC

Clone NameMSMg01-364K16
Chromosome8 (Build37)
Map Location 101,424,849 - 101,425,228
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041173, EG636915
Downstream geneCdh8, A330008L17Rik, LOC667531
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-364K16.T7 (MSMg01no364_k16.b1)MSMg01-364K16.TJ (MSMg01no364_k16.g1)
ACCAG472808AG472809
length804781
length of high quality
(start - end)		354 (51 - 404)380 (86 - 465)
definitionCHROMAT_FILE: MSMg01no364_k16.b1 PHD_FILE: MSMg01no364_k16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:00:51 2005CHROMAT_FILE: MSMg01no364_k16.g1 PHD_FILE: MSMg01no364_k16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:00:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTTCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAATAAGTATTTCCTAAATCCAAAAAATGGTTGTCTCCTGA
CTTTCCCTATTGTGATAACATGATCTAGTATAAATAACTTAGTTGGAGAA
ACTTCCCAATTTGAAGTTCCACTTCTTCCTTGTAGGGTGTGATTCTGATG
CTAAGGATCTGTTCTCTAATTGGTTGTATCATTAAAGATGACAGCCAATT
CCTGGAAGGGGGAAAAGAGGATTTCCAAGTCCCCACATGAGAAAACTGGG
AAATGAAAAAAAGGAAAGGGGTAATCACTATGATTCAGAAGGAGAAAAGG
TGTCCAGCCATGTGAGATCTTGGGTGGAGCCACCAGGCTGGAAGTTAGGG
TGTTGAGCAGGGACTAAAGGTAACTGACCAACTGAAGTTGAGGGCAGATT
TATGGCGCTGAGCTAATAATATTGATAACAACATTTTTGTGTGGCAAAAT
ATAAATAACCTTTTTAGTGATCCATTATAAGAAGTCGAAATCTGAATATG
GGTGCCTGTTTCCCATATAATTTGCGTAATATTTTTTTTCCCCCTCAATG
GAACTATTTTGCATTATTTCCTCTATCTTCCTTTATATTCCATTCACTCA
TTTTGTGTCTTTATTTTTTTTATTTCACTCTTGTAGACTTACTATTTCCA
TCGTTTATATACCCCTTTATTTTTTTCCTATCTTGTATTATTTATCTTTT
TTCATCTCTCTTCTCACATTCTGGAAGCCGATTTAAACTTTCCATCGCTT
AGTT

ATAATAACTCTATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGCCTTATGTTTTGA
ACAAGGCCTGAACAGGCATGCAACAGAAGTGGAGGATGGGAAAAATGGTG
TTAAGACTGACTGTAAGCTGGTTGGAGCCCCAGATGTGGGACATTAAATA
ACAGCCACATTAAAACCTTGTCCTCATAACCGCATCCTTTCCCTCACAGT
AATCACATGTTTCTTAGAGATTTCATGGTATGCTTTTCAAAAGATCCATC
TTTGTCATTGAAATCTTAAAAGAACTTGAGACCTTTTAAAGTGATTTGTA
AATATGCTTTTTTAATAAAAGCACATTTTTCACTGAATTTTTATTTTTAA
TGCTACTTTCTCTGAATCAGAAACAAACAAAGGATTGACATGAGATGACT
ATTGTTTTAAATTAAGATTATGAGATGCTGAAATATATTCTTGTGAAGAA
CGAGGATCCTTCATTGTTATCTCCCAAATAACTAAGTAAAAATAATGTCT
GTCTCCTTACACCCGTTTTTATGTTCTCCTAGGTACTCAAAAATCCCTTG
GGTTTCCTATTTAAGAGAGCCCTCCTTTTGCATCAATGGCATTCGGATTT
TTTTTCCCTCATATCCTCCCCATGAATGAAAAAAACTCACAAAACACTCC
CCCAACGCCTATCGCATCACTAATGCTGTGACTCACTCTTCTTTTTCCTT
CTCATCTTCCTTCCCCCATCTCCTATCTACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no364_k16.g1 MSMg01no364_k16.g1 CHROMAT_FILE:
MSMg01no364_k16.g1 PHD_FILE: MSMg01no364_k16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:00:51 2005
         (380 letters)



>mm_chr8_101424649_101425428
          Length = 780

 Score =  704 bits (364), Expect = 0.0
 Identities = 376/380 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agccttatgttttgaacaaggcctgaacaggcatgcaacagaagtggaggatgggaaaaa 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 580 agccttatgttttgaacaaggcctgaacaggcatgcaacagaggtggaggatgggaaaaa 521

                                                                       
Query: 61  tggtgttaagactgactgtaagctggttggagccccagatgtgggacattaaataacagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 tggtgttaagactgactgtaagctggttggagccccagatgtgggacattaaataacagc 461

                                                                       
Query: 121 cacattaaaaccttgtcctcataaccgcatcctttccctcacagtaatcacatgtttctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 cacattaaaaccttgtcctcataaccgcatcctttccctcacagtaatcacatgtttctt 401

                                                                       
Query: 181 agagatttcatggtatgcttttcaaaagatccatctttgtcattgaaatcttaaaagaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 agagatttcatggtatgcttttcaaaagatccatctttgtcattgaaatcttaaaagaac 341

                                                                       
Query: 241 ttgagaccttttaaagtgatttgtaaatatgcttttttaataaaagcacatttttcactg 300
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 340 ttgagaccttttaaagtgatttgtaaatatgattttttaataaaagcacatttttcactg 281

                                                                       
Query: 301 aatttttatttttaatgctactttctctgaatcagaaacaaacaaaggattgacatgaga 360
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 280 aatttttatttttaatgctactttctctgaatcagaaacgaacaaaggattgacatgaga 221

                               
Query: 361 tgactattgttttaaattaa 380
           | ||||||||||||||||||
Sbjct: 220 taactattgttttaaattaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 780
Length adjustment: 9
Effective length of query: 371
Effective length of database: 771
Effective search space:   286041
Effective search space used:   286041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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