BAC Information

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BAC

Clone NameMSMg01-364O10
Chromosome8 (Build37)
Map Location 76,803,669 - 76,803,879
singlet/doubletsinglet
Overlap genenone
Upstream geneLarge, LOC100039001, LOC666134, Crry-ps, LOC666146
Downstream geneIsx, Hmgb2l1, Tom1, LOC100039134, Hmox1, Mcm5, Rasd2, LOC675507
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-364O10.T7 (MSMg01no364_o10.b1)MSMg01-364O10.TJ (MSMg01no364_o10.g1)
ACCAG472986AG472987
length796838
length of high quality
(start - end)
210 (70 - 279)266 (76 - 341)
definitionCHROMAT_FILE: MSMg01no364_o10.b1 PHD_FILE: MSMg01no364_o10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:12 2005CHROMAT_FILE: MSMg01no364_o10.g1 PHD_FILE: MSMg01no364_o10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCGAGAATCCGCGG
AATTCTCANATGTTTACCGTGCTATCTTTGGTAATCATATATTCCATAGT
TTTCATTGATTTTGGTCACCTTAATAGTTTTGAAATGAGCAGATAATGTG
CTTTATAAATTTTTTTTTCATCTGGGACTGTTTAATGTCACGCTTCTGGA
TCAAATGAGGCTGCATGTTCTTTGGTAGAATATGTGTGTGATACCACCCT
CGTTACATCATATATCAAGGGCCTGCCCTTAATTTGAGGCTTGCTAGTGT
TAATATTTTTTCTGTTTTTTTATATTAGATATTTTCTACATTTACATTTC
AAATGCTATCCCCTATCCTAGTCTCCTCTCACAAAGTCCCCTATACCCTC
CCCCAACCCAGTAGTGTTAATCTTAAACTTAGTCTCAAAGTTACCTCTTT
GCCTATATTTTCTGATGTATTCGTTCTCCCTTTTCATATGGTATTCTCCA
GAATAAATCCACTGTTGCATACCCCACTGATGATTCTTATTGACAGTATT
TCGCTTACTTCCTCACTATTTTTGTTCTCCCTCGTATTCTACATGCCCTA
TTCTTCTTAACACTTATTATTTTTTATTACCCCTGTTTTCCTTTACTTTT
TTGTTATTCCTAAGATACTTTACCTATTTCTCTCTCTTTCATTATCCCTT
TCTATATTATTCCTTCTCTTCTATTCCATCCTGTTTTCACTTTTCCTTCT
CTCCCTTTTATAATCTTCATGTGTAACTCTTTCACTCCTACTTATN
NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGAGCCCCATTTT
TAATGGGGTTATTTGATTTTCTGGAGTCCACCTTCTTGAGTTCTTTATAT
ATATATTGGATATTAGTCCCCTATCCGATTTGGGATACAGTACCCCGGAG
CTCTTGTCTCTAGCTGCATATGTATCAAAAGATGGCCTAGTCAGCCATCA
CTGGAAAGAGAAGCCCTTTGGACTTGCAAACTTTATATGCCCCAGTACAG
GGGAACGCCAGGGCCAAAAAGGGTTAGTGGGTGGGTAGGGGATTTTCCTT
TTTTTTATTTTTGTTGGGCCTGTACGTTTACTTTTTCTCTTTTCTTTCTT
TTTTTTTCTTTTTCTTTTTCCCCCCGCTCTGGTATTTTCTTTTTCCTTTT
TTTTTTCTTGCGTGTTGTTTTTTTTTCTATCTGCATGTTGTTTTCTTTTT
TCTTTTTTCCGTTTATGTCGTTCTCCTTCTTCTTTTTTTTCTATTTCTAA
TTCTTTGTTTGTCTCTTTTCTCTTCTTTTGCTCCTAGCTTGTTTTTCATT
CTTTTGTGTATTTCTCCTACCTTTAACTTTTTTTCTTTTTTATTTTTTTT
TTCATTTTTTGTTCTGTCTTGCCCCTGTTTATTGTTTAGACTTCATAATA
TTCGCTGTTCTTCTCTGTATTTTTTTTTTATTCTCCTTCTTTTTCTTTCC
TTTCTTCTATTTGTTTTTTTCTTTATGTTCTTATTTTTATGTTTTTTTCG
TGTCTGTCTCCTTCTTTATTCTCATTCCATGTTCGGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no364_o10.b1 MSMg01no364_o10.b1 CHROMAT_FILE:
MSMg01no364_o10.b1 PHD_FILE: MSMg01no364_o10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:12 2005
         (210 letters)



>mm_chr8_76803469_76804079
          Length = 611

 Score =  393 bits (203), Expect = e-114
 Identities = 209/211 (99%), Gaps = 1/211 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgctatctttggtaatcatatattccatagttttcattgattttggtcaccttaatagtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgctatctttggtaatcatatattccatagttttcattgattttggtcaccttaatagtt 260

                                                                       
Query: 61  ttgaaatgagcagataatgtgctttataaattttttttt-catctgggactgtttaatgt 119
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 ttgaaatgagcagataatgtgctttataaattttttttttcatctgggactgtttaatgt 320

                                                                       
Query: 120 cacgcttctggatcaaatgaggctgcatgttctttggtagaatatgtgtgtgataccacc 179
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 cacgcttctggatcaaatgaggctgcatgttctttgggagaatatgtgtgtgataccacc 380

                                          
Query: 180 ctcgttacatcatatatcaagggcctgccct 210
           |||||||||||||||||||||||||||||||
Sbjct: 381 ctcgttacatcatatatcaagggcctgccct 411


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 210
Length of database: 611
Length adjustment: 9
Effective length of query: 201
Effective length of database: 602
Effective search space:   121002
Effective search space used:   121002
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)