BAC Information

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BAC

Clone NameMSMg01-365C17
Chromosome8 (Build37)
Map Location 101,305,522 - 101,306,041
singlet/doubletsinglet
Overlap genenone
Upstream geneEG384885, LOC100041173, EG636915
Downstream geneCdh8, A330008L17Rik, LOC667531
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-365C17.T7 (MSMg01no365_c17.b1)MSMg01-365C17.TJ (MSMg01no365_c17.g1)
ACCAG473190AG473191
length777752
length of high quality
(start - end)		524 (37 - 560)489 (74 - 562)
definitionCHROMAT_FILE: MSMg01no365_c17.b1 PHD_FILE: MSMg01no365_c17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:36 2005CHROMAT_FILE: MSMg01no365_c17.g1 PHD_FILE: MSMg01no365_c17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAATG
TGTTCATGGGTAGAGCATATTTGGAATTTACTATGTCTCTAAGACCTAAA
ACATAGACAAACACATAATATGTGCACATTAATTGCTTATTGGCTTTATG
AATTAAGGGGTCTTTAGCAGGAAAACCTGCTCATTGATTCACAAATGAGG
TGCACAGTTTTGACCCTGGGACCTTGTCTTTCTTCCTCTTTGAATAAGAT
GCGCAGTTATGACTCAGGACCTTGTCTTTCCTCCTCTTCAAATGGCATTG
CATTAAAAGGCACAGTTCACTCCATCTGAAGAGCGGGCATTCTTGCTTAG
CTTACAGAGACACTGCTCCCACTAAATGCAGTTCCTGCACTCAGTGGTTT
CACAATAGCTCTCCAGGGTACATTTAAAGACTTCCACTCAAGTCACCTCA
CAAATTAATTTGATACTTTTGAAGCTTTATTAATGCAAATTGACTGGATA
TTGTAAACATACACAGATGAGTGCTCAGGTTTCCCACTGTTCTCGGTATA
CACACAGTTATGTTTTTAAGAAGCTTTGCAAATAGACATAATTTTCACAA
CCAACTATGGTTGAAATAACCTAAAGTGAATATACCACTTAAATACTTTT
TCTTTAATTATTCCCAGACCTATTTAAAAAGTACATATTTATAATTCCCC
GCGAAGAACACGGATTGGCCCTGTTCCCCAAAATAGTGCCCACAGACTGG
TGTCAATACCTTATTAATTGTTCCCCN

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTATCCCATTTTTT
AATAGGGTTATTTGGTTTCCTGGAGTTCAACTTCTTGAGTTCTTTATATA
TATTGGATATTAGCCCTCTATCAGATTTAGGATTGGTAAAGATCTTTTCC
AAGATGTTGGTCGCCATTTTGTCTTATTGACAGTGACCTTTGCTTTGCAG
GAGCTTTGCAATTTTATGAGGTCCCATTTGTTGACTCCTGATCTTATAGC
ATGAGCCATTGCTGGTCTTTTCAGGAATTTTTCCCCTGTGCCCATATCTT
CGAGGGTCTTCCCCACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTCTT
ATGTAGAGTTCCTTGATCCACTGAGACTTGAGTTTTTTCAAGAAATTTGC
ATTCTTCTACATGTTAGGCACCAGTTGAACCAGCACCATTTGTTAAAACG
GCTGTCTTCTTTTCACTGGATGTTTTTTTTTTCTACTTTTTCAAGGATCA
AATGACCATAGGTGTGTGGATTCATATCTGGGTCTTCAATTCTATTCTAT
TGATCTACCCGNCTGTCACTGTACCACTACCATGCAGTTTTTATCAGAAT
TTCTCTGGAGTACAGCTTGAAGTCAGGGATGGGGATTCCCTCACAAGGTT
TTTTTATTGTTGAGAAAATTTTTTGCTATCCCCAGGTTTTTTTATATCTA
AG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no365_c17.b1 MSMg01no365_c17.b1 CHROMAT_FILE:
MSMg01no365_c17.b1 PHD_FILE: MSMg01no365_c17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:36 2005
         (524 letters)



>mm_chr8_101305318_101306241
          Length = 924

 Score =  967 bits (500), Expect = 0.0
 Identities = 515/520 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaatgtgttcatgggtagagcatatttggaatttactatgtctctaagacctaaa 64
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaatgtgaacatgggtagagcatatttggaatttactatgtctctaagacctaaa 264

                                                                       
Query: 65  acatagacaaacacataatatgtgcacattaattgcttattggctttatgaattaagggg 124
           |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct: 265 acatagacaaacacataataggtgcacattaattgcttactggctttatgaattaagggg 324

                                                                       
Query: 125 tctttagcaggaaaacctgctcattgattcacaaatgaggtgcacagttttgaccctggg 184
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 325 tctttagcaggaaaacctgctcattgattcacaaatgaggtgcacagttttgaccccggg 384

                                                                       
Query: 185 accttgtctttcttcctctttgaataagatgcgcagttatgactcaggaccttgtctttc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 accttgtctttcttcctctttgaataagatgcgcagttatgactcaggaccttgtctttc 444

                                                                       
Query: 245 ctcctcttcaaatggcattgcattaaaaggcacagttcactccatctgaagagcgggcat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctcctcttcaaatggcattgcattaaaaggcacagttcactccatctgaagagcgggcat 504

                                                                       
Query: 305 tcttgcttagcttacagagacactgctcccactaaatgcagttcctgcactcagtggttt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tcttgcttagcttacagagacactgctcccactaaatgcagttcctgcactcagtggttt 564

                                                                       
Query: 365 cacaatagctctccagggtacatttaaagacttccactcaagtcacctcacaaattaatt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cacaatagctctccagggtacatttaaagacttccactcaagtcacctcacaaattaatt 624

                                                                       
Query: 425 tgatacttttgaagctttattaatgcaaattgactggatattgtaaacatacacagatga 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tgatacttttgaagctttattaatgcaaattgactggatattgtaaacatacacagatga 684

                                                   
Query: 485 gtgctcaggtttcccactgttctcggtatacacacagtta 524
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gtgctcaggtttcccactgttctcggtatacacacagtta 724


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 924
Length adjustment: 10
Effective length of query: 514
Effective length of database: 914
Effective search space:   469796
Effective search space used:   469796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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