Query= MSMg01no365_j05.b1 MSMg01no365_j05.b1 CHROMAT_FILE:
MSMg01no365_j05.b1 PHD_FILE: MSMg01no365_j05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:07 2005
(507 letters)
>mm_chr8_105317450_105318351
Length = 902
Score = 828 bits (428), Expect = 0.0
Identities = 483/504 (95%), Gaps = 7/504 (1%)
Strand = Plus / Minus
Query: 5 gaattccatactaaagctcgttaaccattacttttattgatccctttttatgttatcaag 64
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 702 gaattccatactaaagctcgttaaccattacctttattgatccctttttatgttatcaag 643
Query: 65 taagtccctgtgcgatttgttcctcacatgtgaatcagtctgttctgtgtgcatcccagg 124
|||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 642 taagtccctgtgtgacctgttcctcgcatgtgaatcagtctgttctgtgtgcatcccagg 583
Query: 125 tttccggtacactataacctttccttcatcattccctccccccatggaaattaggttcac 184
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 582 tttccggtacactataacctttccttcatcattccctccccctatggaaattaggttcac 523
Query: 185 agttactctacctctaggactcgagcaaatgaacaatatttaataattaattccctgatt 244
| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 522 aattactctacctctaggactcgagcaaatgaacaatatttaa----taattccctgatt 467
Query: 245 ggccagctgttgttgactttgaataaaaatgcccagtgctttgaaatttcccatctttac 304
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 ggctagctgttgttgactttgaataaaaatgcccagtgctttgaaatttcccatctttac 407
Query: 305 ctataaagtattcactatgctctgtaagaaagtagaaagagtttgcatgaaaatattcat 364
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 406 ctataaagtattcactatgctctgtaagaaaatacaaagagtttgcatgaaaatattcat 347
Query: 365 gaattaaatacgcactaaaata-ttttttctaggctgtgacacgtaacttattggtaaaa 423
||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct: 346 gaattaaatacccactaaaatatttttttctaggctgtgaca--taacttattggtaaaa 289
Query: 424 tgcttgctgagcatgctcggagccggatagttctttgggtggttctttaattttacgagt 483
|||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 288 tgcttgctgagcatgcccagagccggagagttctttgggtggttctttaattttacgagt 229
Query: 484 gtcctggaagcttattaagtgagg 507
||||||||||||||||||||||||
Sbjct: 228 gtcctggaagcttattaagtgagg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 902
Length adjustment: 10
Effective length of query: 497
Effective length of database: 892
Effective search space: 443324
Effective search space used: 443324
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no365_j05.g1 MSMg01no365_j05.g1 CHROMAT_FILE:
MSMg01no365_j05.g1 PHD_FILE: MSMg01no365_j05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:07 2005
(520 letters)
>mm_chr8_105111470_105112390
Length = 921
Score = 992 bits (513), Expect = 0.0
Identities = 519/521 (99%), Gaps = 1/521 (0%)
Strand = Plus / Plus
Query: 1 atttataaaacctactaaaaatgaaaaataattatcatatatctagattttttttcgggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttataaaacctactaaaaatgaaaaataattatcatatatctagattttttttcgggg 260
Query: 61 acagtagattcaggaacacgtagatattctctcacactttaggatctgggaaactgagga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acagtagattcaggaacacgtagatattctctcacactttaggatctgggaaactgagga 320
Query: 121 cagatacttataaattatttggcttccagtgcacacttgtgaacacatccacactttctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagatacttataaattatttggcttccagtgcacacttgtgaacacatccacactttctg 380
Query: 181 tagtcatgtaattaaacagcatgctttcttttgtgagtgtgctccatgacagtctctggg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagtcatgtaattaaacagcatgctttcttttgtgagtgtgctccatgacagtctctggg 440
Query: 241 atacgttctggcaataaaatgatagaaaggaatgactgctgtcctaatgtccttaaagtc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atacgttctggcaataaaatgatagaaaggaatgactgctgtcctaatgtccttaaagtc 500
Query: 301 acagttatttcagaggttctgaacattgttcattttttgatagatttatcttaaattaac 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acagttatttcagaggttctgaacattgttcattttttgatagatttatcttaaattaaa 560
Query: 361 tatgtattgcagaataaaatttctcaagtgccagcactagaaggggagggtgttgtgcaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tatgtattgcagaataaaatttctcaagtgccagcactagaaggggagggtgttgtgcaa 620
Query: 421 aatggacagttaaaaaaatagcagaaaactgataaaggtgagatgccatttggtagcatg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aatggacagttaaaaaaatagcagaaaactgataaaggtgagatgccatttggtagcatg 680
Query: 481 tatgaaaggagtttactttgacttttttttt-gaaattaag 520
||||||||||||||||||||||||||||||| |||||||||
Sbjct: 681 tatgaaaggagtttactttgacttttttttttgaaattaag 721
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 921
Length adjustment: 10
Effective length of query: 510
Effective length of database: 911
Effective search space: 464610
Effective search space used: 464610
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
