BAC Information

Click to search

BAC

Clone NameMSMg01-366A21
Chromosome8 (Build37)
Map Location 11,130,222 - 11,130,692
singlet/doubletsinglet
Overlap genenone
Upstream geneMyo16, LOC100040008, LOC384782, LOC100040507, LOC665306, Irs2
Downstream geneCol4a1, Col4a2, Rab20, 0710008K08Rik, Cars2, Ing1, Ankrd10, 1700016D06Rik, EG665271, LOC665363, LOC624710, LOC665373, Arhgef7, 1700018L24Rik, LOC100040155
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-366A21.T7 (MSMg01no366_a21.b1)MSMg01-366A21.TJ (MSMg01no366_a21.g1)
ACCAG473863AG473864
length769828
length of high quality
(start - end)		474 (49 - 522)---
definitionCHROMAT_FILE: MSMg01no366_a21.b1 PHD_FILE: MSMg01no366_a21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:02:46 2005CHROMAT_FILE: MSMg01no366_a21.g1 PHD_FILE: MSMg01no366_a21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:02:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNTTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTACACAAAGTCTCCACTAGGACCTGACAGATCTCCGAGCTGT
CCTTGACAAGCTCTGTCAGGGGTTGTGACAACACCACATTCTGAAACCAA
CCTATCTCCAACTCTCTGATCTCCAGTGGCCCGTGAAGAAGAGGGTTAGG
AAAGGGGGACTGTGAGCACACACCAGTCATCAGAAAATAACAACACAAAG
AAATAAAATCCTCCCCGTGGGTACAGAGCTTGGGTCAGTCCACAGTATCC
CATCAGGATGTCCCCTCCCCAAGTGTCTCAGCATTCTCTATGACCATTAT
CAGAGCCTTTCTCATCCCCAACGTTTCTGCTGCTGAACTCCAGCAACTAG
ATCCCAGGCAAGCCCCCTTCCCAGTTTCTTATTCTGGGTAATCACAAACA
CTTTTCCAGTGGGACCCCTGACAGATCTGAGCCCTTGACACAGAGTTAGC
AGATCCAGTAAGCGTTGTTTCCAGTACAAACTACCCTCTGCAGAGAGTTT
CTTTAAATCCACCCCACCCTATACTGACTTTCCTTTTCTGATCAGAAGGG
TTTTCATTGTCCTANAACCTCTGGGGCCTTTGCATCTATATGGAAGCCCA
CCTAAGAAGCTTGCTTCTCCATGGGGGAAAAAAGGCCAGATCATTCTCTT
ACCCCCCCATGGGGAGAAATGACATGGTTGGGGGAAGGGGATAAAAATGG
ACCCCTGGCCGGGGGGGGG

ATGAGACCGGGNAGGCCCGGCCAGGACGCCGTGCGCGTCCCCCXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGAGGCTGAGGCAGGATAAGAAGA
TAGGACTCGGGAGGAGGGAAAGAAGCAGACTGAGNNAGAGGGGAAAGGAG
GAGAAGNACAGAACCCAGCTGGGTCGTCCTCTCCCAGATGNANGAGATAG
CTCCTCCTCACTTCTTCCTGCCTGGCTGTGGAACATACCCTTCCTCCAGG
ACCCTGGAAACCTTCCGGCCTGCCCTTGGTAATGGCCTTGCCAGCCCAGG
GCTATAACCCGGCGGGTAAAAAAAANGTTCCCCCCTCCCGCCCCCGGAAA
CCCTCCCCCTCCCCCCCAAACAACCCCCCCCCTTTTTNNATATTTTTTTT
TCCCCCCCCCCCCCCCTTTTTTTTCCCCCCCCCCCTCCCTCCCTTTTCCC
TCCCCNTTTTTTCNNNNNNNNNCCCCCNNNTCCCCCCCCCCCCNNCNCCC
CCCTNCCCTNCCCTCCCCCCCCCTCTTCCCCCTTTTTCTCTTTCCCCCCC
CCCCCCCTCCCNNNNCCTTTCCCCCCCTCCCCCTCTTTTCCCTCTTCNTC
TTTCCCCCTCTTCNCCCTCCCCCCCTTCCTTTTTTTTCCCCCCCCTCTCT
CCCTCTCTCCTCCTCCTCCCCCTCTCCCTCCCTCTCCCCTCTNNCCCCCC
CCCCCCTCCCTCTNTCCCTCCTTTTTTTCCCTCTTTTTCCTTCTTCTCCC
CCCCCCCCTTCCCCCTTTTTTTCTTTTTTTCTTCCCCCCCTCCCCCCCCC
TTTCTTATCTCTATACCGATCGGAGGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no366_a21.b1 MSMg01no366_a21.b1 CHROMAT_FILE:
MSMg01no366_a21.b1 PHD_FILE: MSMg01no366_a21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:46 2005
         (474 letters)



>mm_chr8_11130019_11130892
          Length = 874

 Score =  903 bits (467), Expect = 0.0
 Identities = 470/471 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctacacaaagtctccactaggacctgacagatctccgagctgtccttgacaagc 63
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctacacaaagcctccactaggacctgacagatctccgagctgtccttgacaagc 263

                                                                       
Query: 64  tctgtcaggggttgtgacaacaccacattctgaaaccaacctatctccaactctctgatc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tctgtcaggggttgtgacaacaccacattctgaaaccaacctatctccaactctctgatc 323

                                                                       
Query: 124 tccagtggcccgtgaagaagagggttaggaaagggggactgtgagcacacaccagtcatc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tccagtggcccgtgaagaagagggttaggaaagggggactgtgagcacacaccagtcatc 383

                                                                       
Query: 184 agaaaataacaacacaaagaaataaaatcctccccgtgggtacagagcttgggtcagtcc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agaaaataacaacacaaagaaataaaatcctccccgtgggtacagagcttgggtcagtcc 443

                                                                       
Query: 244 acagtatcccatcaggatgtcccctccccaagtgtctcagcattctctatgaccattatc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 acagtatcccatcaggatgtcccctccccaagtgtctcagcattctctatgaccattatc 503

                                                                       
Query: 304 agagcctttctcatccccaacgtttctgctgctgaactccagcaactagatcccaggcaa 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 agagcctttctcatccccaacgtttctgctgctgaactccagcaactagatcccaggcaa 563

                                                                       
Query: 364 gcccccttcccagtttcttattctgggtaatcacaaacacttttccagtgggacccctga 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gcccccttcccagtttcttattctgggtaatcacaaacacttttccagtgggacccctga 623

                                                              
Query: 424 cagatctgagcccttgacacagagttagcagatccagtaagcgttgtttcc 474
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 cagatctgagcccttgacacagagttagcagatccagtaagcgttgtttcc 674


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space:   400896
Effective search space used:   400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |