Query= MSMg01no366_j21.b1 MSMg01no366_j21.b1 CHROMAT_FILE:
MSMg01no366_j21.b1 PHD_FILE: MSMg01no366_j21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:31 2005
(448 letters)
>mm_chr8_115622124_115622970
Length = 847
Score = 830 bits (429), Expect = 0.0
Identities = 443/448 (98%), Gaps = 1/448 (0%)
Strand = Plus / Minus
Query: 1 tacagcagcgactgagggactttgcctcttccagctggggcttttggtagagaagcccct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 tacagcagcgactgagggactttgcctcttccagctggggcttttggtagagaagcccct 588
Query: 61 gaatatttataagcccaagcatgtcttcctatacttgagaggtttgaattcctaatattg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 gaatatttataagcccaagcatgtcttcctatacttgagaggtttgaattcctaatattg 528
Query: 121 ttgtaattgagaaaaacccaggctgagaaataaatttaaaaccattcactattgatactg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 ttgtaattgagaaaaacccaggctgagaaataaatttaaaaccattcactattgatactg 468
Query: 181 cacctgcacccttgctggagttaataacatatttacaaaagaataggcattccatcgatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 cacctgcacccttgctggagttaataacatatttacaaaagaataggcattccatcgatc 408
Query: 241 taaggagtcggtgttttgagatagattcatccaagatgacttcataattcagaattataa 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 taaggagtcggggttttgagatagattcatccaagatgacttcataattcagaattataa 348
Query: 301 gacatattaaggaaaaaagccaccacacaaaaattaacagaatcagaagaactatagatt 360
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 347 gacatattaaggaaaaaagccaccacac-aaaattaacagaatcagaagaactatagatt 289
Query: 361 ttagaatatcagaaacaacgtatttataaatgttcgaataaactaanaatggagagaata 420
|||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct: 288 ttagaatatcggaaacaacgtatttataaatgtttgaataaactaaaaatggagagaata 229
Query: 421 taggaataggataacacaaaggtataag 448
||||||||||||||||||||||||||||
Sbjct: 228 taggaataggataacacaaaggtataag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 847
Length adjustment: 10
Effective length of query: 438
Effective length of database: 837
Effective search space: 366606
Effective search space used: 366606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no366_j21.g1 MSMg01no366_j21.g1 CHROMAT_FILE:
MSMg01no366_j21.g1 PHD_FILE: MSMg01no366_j21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:31 2005
(451 letters)
>mm_chr8_115431899_115432753
Length = 855
Score = 791 bits (409), Expect = 0.0
Identities = 441/457 (96%), Gaps = 14/457 (3%)
Strand = Plus / Plus
Query: 1 agtagcctaaggttacttaggaaaagctcttacctgaaagagatagggttcctcagtgtg 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 201 agtagcctaaggttacttaggaaaagctctcacctgaaagagatagggttcctcagtgtg 260
Query: 61 caacctctcaccctgtttgcccctgacttatcaaggtatgttgttgatgctattgagaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caacctctcaccctgtttgcccctgacttatcaaggtatgttgttgatgctattgagaga 320
Query: 121 agaggaagtccctgctggggcagggagagggctgctctcactatttattgaggaatgatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaggaagtccctgctggggcagggagagggctgctctcactatttattgaggaatgatg 380
Query: 181 atctaaagggcaatgatcggctttcagtact-------agtgatccagtagtaaacacac 233
|||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct: 381 atctaaagggcaatgatcggct---agtactgaaaactagtgatccagtagtaaacacac 437
Query: 234 agccaaaatcctctgccgtgttacatttatggataacttgtaggctactattttcatcag 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 agccaaaatcctctgccgtgttacatttatggataacttgtaggctactattttcatcag 497
Query: 294 acaccaaaatgcctgatataatagcaagggaagagggtgagttgtctcagatggcatagc 353
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 agaccaaaatgcctgatataatagcaagggaagagggtgagttgtctcagatggcatagc 557
Query: 354 tgtggttgcttggctctgtgcgcttggaaagaacatcctggtggcagaagtgtagggaga 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 tgtggttgcttggctctgtgcgcttggaaagaacatcctggtggcagaagtgtagggaga 617
Query: 414 aggag-gtttttttctttattttc-tgacagacagaa 448
||||| ||||||| |||||||| | ||||||||||||
Sbjct: 618 aggagtgtttttt-ctttattt-catgacagacagaa 652
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 451
Length of database: 855
Length adjustment: 10
Effective length of query: 441
Effective length of database: 845
Effective search space: 372645
Effective search space used: 372645
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
