Query= MSMg01no367_g14.b1 MSMg01no367_g14.b1 CHROMAT_FILE:
MSMg01no367_g14.b1 PHD_FILE: MSMg01no367_g14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:34 2005
(329 letters)
>mm_chr8_106809563_106810289
Length = 727
Score = 412 bits (213), Expect = e-119
Identities = 287/325 (88%), Gaps = 28/325 (8%)
Strand = Plus / Plus
Query: 6 aattcttccagagaactgtatttgtaatgtttttattagctcatgttggttatacataac 65
||||||||||||||| | ||||||||||| ||||||||||||| |||||||||| |||||
Sbjct: 206 aattcttccagagaattttatttgtaatgcttttattagctcacgttggttatatataac 265
Query: 66 tatggtttcattgtattttcataatgtatataaagtagttcaatcatgttccaggctctt 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tatggtttcattgtattttcataatgtatataaagtagttcaatcatgttccaggctctt 325
Query: 126 ctccctgtctgtcaccttctcttttgtgcttcgc-actctggataccctgctcttcccaa 184
|||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||
Sbjct: 326 ctccctgtctgtcaccttctcttttgtgcttc-ctactctggataccct-ctcttcccaa 383
Query: 185 ctatccccacctgctcctccttcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 244
|| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctgtccccac-tgctcctccttcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 442
Query: 245 cgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgtttgcgtgcgtgcgtgcgtgtgtgtgtg 304
||| ||| |||||| || ||| || ||| ||||||||||
Sbjct: 443 tgtgtgtg--tgcgtg--tg----------tgtatgtgtg----------tgtgtgtgtg 478
Query: 305 tgtgtgtgtgtgtgtgtgtgtgttc 329
|||||||||||||||||||||||||
Sbjct: 479 tgtgtgtgtgtgtgtgtgtgtgttc 503
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 121
Number of extensions: 48
Number of successful extensions: 48
Number of sequences better than 10.0: 1
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 727
Length adjustment: 9
Effective length of query: 320
Effective length of database: 718
Effective search space: 229760
Effective search space used: 229760
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no367_g14.g1 MSMg01no367_g14.g1 CHROMAT_FILE:
MSMg01no367_g14.g1 PHD_FILE: MSMg01no367_g14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:34 2005
(356 letters)
>mm_chr8_107005714_107006469
Length = 756
Score = 648 bits (335), Expect = 0.0
Identities = 350/359 (97%), Gaps = 9/359 (2%)
Strand = Plus / Minus
Query: 1 ttgaactaaaggacataagcgaaaaagagactcttagagagcactggaaggcagcaaagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 ttgaactaaaggacataagcgaaaaagagactcttagagagcactggaaggcagcaaagg 404
Query: 61 aaattctatgcagaataaaacaatttgaaaaaggagggaaagaggtgagtttttcatttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 aaattctatgcagaataaaacaatttgaaaaaggagggaaagaggtgagtttttcatttc 344
Query: 121 ccagaatatagaactctatgcaaatattttaaaatagtataagaatgtttttctccagtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 ccagaatatagaactctatgcaaatattttaaaatagtataagaatgtttttctccagtt 284
Query: 181 gttttaaaatatttttaatgtaagcctagtggtgtaaattttaagagtaatgcttaagga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 gttttaaaatatttttaatgtaagcctagtggtgtaaattttaagagtaatgcttaagga 224
Query: 241 ctgaagtttgaacatataacaga-tttttttttacatttatttttatttttatctttatc 299
||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct: 223 ctgaagtttgaacatataacagattttttttttaca------tttatttttatctttatc 170
Query: 300 actaaaaagattctatttttatt--tgtgtgtgtgtgtaagagagagggggtgaagggg 356
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 169 actaaaaagattctatttttatttgtgtgtgtgtgtgtaagagagagggggtgaagggg 111
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 356
Length of database: 756
Length adjustment: 9
Effective length of query: 347
Effective length of database: 747
Effective search space: 259209
Effective search space used: 259209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
