BAC Information

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BAC

Clone NameMSMg01-367M16
Chromosome8 (Build37)
Map Location 6,207,104 - 6,207,437
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC623409, LOC669429, LOC100040360
Downstream geneEG665127, EG546032
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-367M16.T7 (MSMg01no367_m16.b1)MSMg01-367M16.TJ (MSMg01no367_m16.g1)
ACCAG475176AG475177
length776712
length of high quality
(start - end)		345 (48 - 392)152 (58 - 209)
definitionCHROMAT_FILE: MSMg01no367_m16.b1 PHD_FILE: MSMg01no367_m16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:03 2005CHROMAT_FILE: MSMg01no367_m16.g1 PHD_FILE: MSMg01no367_m16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTTTCTATGCTATGTAATTGAAAATTTTATATTTTATGCTTTA
TTTTAATTTCATGTTATAAAGGATAACATTAATAAATCTAATCAAATCTT
AAAGTAGTATTGTATAAATTTTGTATAAAATTTTGAAATTTCTGGGTTAC
TCCATTTTACATATATTCTGTCATACTTTCTAAGTCATTTTTGGGGGAGG
GATGGAAAATAGCAAAATCTACCAAAAATAAACTACATTAAAATAAATAC
TCATATTTGAGAGCAAAAGAGTTTCATGCAATCGTATATGTATGTATGTA
TGTGTGTGTATGTATGTATATATATGTATATATATATGAANATTTANACA
TATATATATATTTATACCCCCTTCTTTAATATACTTTTTTTCCCAAATAT
TAATTTATACTTTCTACAATTTAATTTTTCAAACATTTCTTAATTTTTTC
ATTTTCTTTTTCTTATTTTATATTTTTTCTTATATTTTATTTTTTTACTA
CCTTATTTTTAAACTTCTAAAATTTTATTTATTACTTCATTTATACTCCC
CATATTTTCTTTCTTACTTTTTATTCCCTCCCTTTTTCCTTAATTCTTTT
AATTATCCCTTTTCCTTTTTTTTTCTTATAACTACAATAAAAAAATAATC
CTCCTATATATCTTTCTCTAATCCCTTTTTCTTTCTACACTTTAATTTTT
TTCATACCCTAATTCCTCACCTCCAN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTCCTCTCTTCTTCAAATCATGACATCTCCTGTGGATCAGTCCT
TGATGACCCAGGATAGGGGAACTCTAGGCTGCTGAGGCAGGAATGGGTGG
GCAGGTGGAGGAGCACCCTCATAGAGGCAGGGGAAGGGAGGAGGGGATAG
GGGGATTGNNNNNNNNNNNNNNNNNNNNNNNNNTNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTT
TTTNNNNNNTNNNNNNNNNNTNNNTNNTTNTTTTTTTTTTTTTTTTNTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNTNNNNTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTT
TTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTT
TTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTT
TTTTTTTTTTNTTTTTTNTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTT
TTTTTTTTNTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no367_m16.b1 MSMg01no367_m16.b1 CHROMAT_FILE:
MSMg01no367_m16.b1 PHD_FILE: MSMg01no367_m16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:03 2005
         (345 letters)



>mm_chr8_6206900_6207644
          Length = 745

 Score =  600 bits (310), Expect = e-176
 Identities = 329/338 (97%), Gaps = 6/338 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttttctatgctatgtaattgaaaattttatattttatgctttattttaatttca 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttttctatgatatgtaattgaaaattttatattttatgctttattttaatttca 264

                                                                       
Query: 65  tgttataaaggataacattaataaatctaatcaaatcttaaagtagtattgtataaattt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgttataaaggataacattaataaatctaatcaaatcttaaagtagtattgtataaattt 324

                                                                       
Query: 125 tgtataaaattttgaaatttctgggttactccattttacatatattctgtcatactttct 184
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 325 tgtataaaattttgaaatttctggtttactccattttacatatattctgtcatactttct 384

                                                                       
Query: 185 aagtcatttttgggggagggatggaaaatagcaaaatctaccaaaaataaactacattaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aagtcatttttgggggagggatggaaaatagcaaaatctaccaaaaataaactacattaa 444

                                                                       
Query: 245 aataaatactcatatttgagagcaaaagagtttcatgcaatcgtatatgtatgtatgtat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 445 aataaatactcatatttgagagcaaaagagtttcatgcaatcgtatatgtatgtatgt-- 502

                                                 
Query: 305 gtgtgtgtatgtatgtatatatat--gtatatatatat 340
             ||||||||| ||||||||||||  ||||||||||||
Sbjct: 503 --gtgtgtatgcatgtatatatatatgtatatatatat 538


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 745
Length adjustment: 9
Effective length of query: 336
Effective length of database: 736
Effective search space:   247296
Effective search space used:   247296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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