Query= MSMg01no368_c24.b1 MSMg01no368_c24.b1 CHROMAT_FILE:
MSMg01no368_c24.b1 PHD_FILE: MSMg01no368_c24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:34 2005
(501 letters)
>mm_chr8_61469732_61470631
Length = 900
Score = 891 bits (461), Expect = 0.0
Identities = 488/497 (98%), Gaps = 1/497 (0%)
Strand = Plus / Minus
Query: 5 gaattctctgattaattgctacaaaacttgtcactcaaatgcttcaaatttcactgaaat 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 gaattctctgattaattgctacaaaacttgtcactcaaatgcttcaaatttcactgaaat 641
Query: 65 attatgcaaaaatgtagacctgtattttgaattgatatctggtgatgtcagtcccattgg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 attatgcaaaaatgtagacctgtattttgaattgatatctggtgatgtcagtcccattgg 581
Query: 125 acgtgtatctactcttttatggaaatttttcattttatgtggagaactttaaacttttaa 184
||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 580 acgtgtatctactcttttatggatttttttcattttttgtggagaactttaaacttttaa 521
Query: 185 cagtacactcctgtatcttaaaatgagcacgttacctatcttaataatttatattacatt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 cagtacactcctgtatcttaaaatgagcacgttacctatcttaataatttatattacatt 461
Query: 245 ttcctatataatggtaaacactgttttgaaaacataattttctttcagattgtctcaaaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 ttcctatataatggtaaacactgttttgaaaacataattttctttcagattgtctcaaaa 401
Query: 305 atatcctaaatttaaggataaaataagaagataaaataaaaaaaatatatccctctctgt 364
|||||||||||||| |||||||||||||||||||||| |||||| |||||||||||||||
Sbjct: 400 atatcctaaatttagggataaaataagaagataaaattaaaaaa-tatatccctctctgt 342
Query: 365 cacagaaagagaagacataaagaggagaaagaagaaaattcaactaagaagagataagac 424
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 341 cacagaaagagaagacataaagaagagaaagaagaaaattcaactaagaagagataagaa 282
Query: 425 gtaaagatggcacagattttactcaaagcaaatttatatgatacagataataaataaatc 484
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 gtaaagatggcacagattttactcaaagcaaatttatatgatacagataataaataaatt 222
Query: 485 cacaggcaatattgtat 501
|||||||||||||||||
Sbjct: 221 cacaggcaatattgtat 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 900
Length adjustment: 10
Effective length of query: 491
Effective length of database: 890
Effective search space: 436990
Effective search space used: 436990
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no368_c24.g1 MSMg01no368_c24.g1 CHROMAT_FILE:
MSMg01no368_c24.g1 PHD_FILE: MSMg01no368_c24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:34 2005
(430 letters)
>mm_chr8_61306808_61307637
Length = 830
Score = 737 bits (381), Expect = 0.0
Identities = 425/455 (93%), Gaps = 25/455 (5%)
Strand = Plus / Plus
Query: 1 ctcttgaagctcctctccagtcaaggactgagcctctactcagcaagagtgactcccgac 60
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct: 176 ctcttgaagctcctctccagtcaagaactgagcctctactcagcaagagtgactcctgac 235
Query: 61 tagacgggtgacagtgtgtcatctgatgtagagaaccatgtacacgaaaacccattaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 tagacgggtgacagtgtgtcatctgatgtagagaaccatgtacacgaaaacccattaaaa 295
Query: 121 tccctcttttaggtaatttgattatttctttatgaatgtcttcttgttattaaaacacta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 tccctcttttaggtaatttgattatttctttatgaatgtcttcttgttattaaaacacta 355
Query: 181 aatcagagatttgacttgtaaggaacatatttacccgatgattaactgaaaaagcaaagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 aatcagagatttgacttgtaaggaacatatttacccgatgattaactgaaaaagcaaagg 415
Query: 241 gt--------------------at-----tttcaatcagagttctgactaaagtttcatg 275
|| || |||||||||||||||||||||||||||||||
Sbjct: 416 gtgtttttaactgaaaaagcaaatggtgttttcaatcagagttctgactaaagtttcatg 475
Query: 276 gtcaagaaaaaacaactgtgtgttttgaaactttaagtaatcaagtcctctaacatgtaa 335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 gtcaagaaaaaacaactgtgtgttttgaaactttaagtaatcaagtcctctaacatgtaa 535
Query: 336 atgtctgtgactttttaattgtatagagataatcgttccagaaatagcaaatatttgtta 395
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 536 atgtctgtgactttttaattgtatagagataatctttccagaaatagcaaatatttgtta 595
Query: 396 aatagatacactttaagttatctattcaactgtat 430
| ||||||||||||||||||| |||||||||||||
Sbjct: 596 actagatacactttaagttatatattcaactgtat 630
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 830
Length adjustment: 9
Effective length of query: 421
Effective length of database: 821
Effective search space: 345641
Effective search space used: 345641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
