BAC Information

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BAC

Clone NameMSMg01-368I16
Chromosome8 (Build37)
Map Location 86,663,395 - 86,663,862
singlet/doubletsinglet
Overlap geneCc2d1a
Upstream geneLOC100039688, Tbc1d9, Ucp1, Elmod2, 4933434I20Rik, Clgn, Scoc, LOC546077, LOC675854, Olfr370, Ndufb7, Gpsn2, Dnajb1, Gipc1, Ptger1, Pkn1, Ddx39, Cd97, EG384857, Lphn1, Asf1b, Prkaca, Samd1, 1700067K01Rik, 2210011C24Rik, 4432412L15Rik, Il27ra, Rln3, C330011M18Rik, Rfx1, BC057552, LOC100039920, Podnl1
Downstream gene4930432K21Rik, Nanos3, Zswim4, D8Ertd738e, 2410018C20Rik, Ccdc130, Cacna1a, Ier2, LOC100039975, Btbd14b, Trmt1, LOC100039997, Lyl1, Nfix, Dand5, Gadd45gip1, Rad23a, Calr, LOC546080, Farsa, Syce2, Gcdh, Klf1, Dnase2a, Mast1, Rtbdn, Rnaseh2a, LOC666841, Prdx2, Junb, Hook2, Best2, Asna1, 2310036O22Rik, Tnpo2, Fbxw9, EG436049, Dhps, 1500041N16Rik, BC056474, Man2b1, EG244556
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-368I16.T7 (MSMg01no368_i16.b1)MSMg01-368I16.TJ (MSMg01no368_i16.g1)
ACCAG475741AG475742
length715743
length of high quality
(start - end)		154 (85 - 238)468 (69 - 536)
definitionCHROMAT_FILE: MSMg01no368_i16.b1 PHD_FILE: MSMg01no368_i16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:00 2005CHROMAT_FILE: MSMg01no368_i16.g1 PHD_FILE: MSMg01no368_i16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATAAATCTTNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCGCGGAATTCTCAAAACTTCCAAAATAAATCTACTGTATGA
TGTAGCTGTACTACTCCTTGACTTCTGCCCAAAGGACTGGACATCCTACC
CCATGGGTGCTTGCTCAGCCATGTCCATTGCTGTTCTCATCACAGTAGCT
GGACACTGGAGACAGCGTAGATGTCCTATGACTGGGGAATGGGTAATGAA
GATGTGGTCCATAGACACTGTGNAATACTACTCAGCTGTAAAGAAAACTA
AAAGTTCGCAGGTAAAACGGGGGGAACTTAAAATTATTCTTTTTGATGGA
GGAAACCCCCCAAACCCGAAAAGAACAAAAAATTCCCCTGGGACCCCCCT
TTTTTTAAAAAGGCTCCCAAAATTTTTAAAACCTTTTAAAAAGGGGGAGG
TCTCACCCCCCCCCAACGGTAACCTCCCCCAAAACCCCCCCAAAAAAATA
AAAAAAAAGGGGCCCACCTGTGGCCCCCCAACAAAAAAAAAAACCCGGGG
GTTCATAAAAAAAAAGGGGAAAAAAATCGCGGGCGTAACAAAAAAAAAAT
TTTCTTTATCCCCTGTACAAATTCGTGCGCAAGAGGGGCCCCCCCCCCTC
TCTTTATAGGGTGCGGGGGGGGGGNACAACTTCACACTCACTCATCAAAA
ATAAATAATGGTCTT

AAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCAGGACTTTCTCTTTGTTGGTTTTCTGAACAT
CTTCACTGTGTAGCTCAGGTTGGCTTTGATCGTGCAGTCCCTGCCTCAGC
CTCCCAAGTCCTGGGATTACAGGTATGTGTCATGCCAGTCTTATTGCTTT
CTCTATACCGAAGATGGAGCCTGGGGCTTTGTGCATGCTAGGAAGTGCCC
ACCCAGAGTCTGAGCTGATCCGAGCAGAGGAGCTAGGAACCGCAGAGTGC
CTGAACTCCTGACTCCCCTTCCCGGGCTGCTGTTCATTCCCATGGCACTT
GCTTCTCTTGTGCACCCTGGACTCGCACAGATCCTGACAGACTGTGAGGT
GGGCTTCAGCTGGGAGAGGGGCCCCCAATGTGGAGGGTAAGTGTTTCTAC
AGAAGACCTGTGAGCAGCTGAGAACTTCGAGATTTCTACTCTATGGAGGG
CCTGGCAGGAGTGAACAGAATGGAGGAGGGAGGGAGGGGGACAGTCGGAT
ACAGATCTAGCTCCAAACTACCTCCTGACTAATAACTTTCTAGTATCCCT
GACGCAAAAAGTGCTGTCCAGACACCCTCCAGTCTGGGTAAAAACTTCTA
CAAATTTTCCTGACAGCCAAAGTATGTGCTGCCCCTAAAAACTCTACCGT
TTATTAAAAACCGTCTACTGCTCCCTAAATTTTCATACATCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no368_i16.g1 MSMg01no368_i16.g1 CHROMAT_FILE:
MSMg01no368_i16.g1 PHD_FILE: MSMg01no368_i16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:00 2005
         (468 letters)



>mm_chr8_86663195_86664062
          Length = 868

 Score =  905 bits (468), Expect = 0.0
 Identities = 468/468 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggactttctctttgttggttttctgaacatcttcactgtgtagctcaggttggctttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggactttctctttgttggttttctgaacatcttcactgtgtagctcaggttggctttg 260

                                                                       
Query: 61  atcgtgcagtccctgcctcagcctcccaagtcctgggattacaggtatgtgtcatgccag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atcgtgcagtccctgcctcagcctcccaagtcctgggattacaggtatgtgtcatgccag 320

                                                                       
Query: 121 tcttattgctttctctataccgaagatggagcctggggctttgtgcatgctaggaagtgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcttattgctttctctataccgaagatggagcctggggctttgtgcatgctaggaagtgc 380

                                                                       
Query: 181 ccacccagagtctgagctgatccgagcagaggagctaggaaccgcagagtgcctgaactc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccacccagagtctgagctgatccgagcagaggagctaggaaccgcagagtgcctgaactc 440

                                                                       
Query: 241 ctgactccccttcccgggctgctgttcattcccatggcacttgcttctcttgtgcaccct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgactccccttcccgggctgctgttcattcccatggcacttgcttctcttgtgcaccct 500

                                                                       
Query: 301 ggactcgcacagatcctgacagactgtgaggtgggcttcagctgggagaggggcccccaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggactcgcacagatcctgacagactgtgaggtgggcttcagctgggagaggggcccccaa 560

                                                                       
Query: 361 tgtggagggtaagtgtttctacagaagacctgtgagcagctgagaacttcgagatttcta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgtggagggtaagtgtttctacagaagacctgtgagcagctgagaacttcgagatttcta 620

                                                           
Query: 421 ctctatggagggcctggcaggagtgaacagaatggaggagggagggag 468
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctctatggagggcctggcaggagtgaacagaatggaggagggagggag 668


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 868
Length adjustment: 10
Effective length of query: 458
Effective length of database: 858
Effective search space:   392964
Effective search space used:   392964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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