Query= MSMg01no368_j24.b1 MSMg01no368_j24.b1 CHROMAT_FILE:
MSMg01no368_j24.b1 PHD_FILE: MSMg01no368_j24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:07 2005
(646 letters)
>mm_chr8_51440099_51441144
Length = 1046
Score = 1210 bits (626), Expect = 0.0
Identities = 638/642 (99%), Gaps = 2/642 (0%)
Strand = Plus / Plus
Query: 5 gaattcaagcagaa-ttctcttttagtaaatagtacagaattagtacagttaatttttgt 63
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaagcagaagtt-tcttttagtaaatagtacagaattagtacagttaatttttgt 263
Query: 64 tgagttgttttatggctctataataaaatagaatatacaggcctaataaaatctgttaag 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgagttgttttatggctctataataaaatagaatatacaggcctaataaaatctgttaag 323
Query: 124 agtcagctaagggacccatacttattcttttattgtattcaaataaatgcttgtatagat 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agtcagctaagggacccatacttattcttttattgtattcaaataaatgcttgtatagat 383
Query: 184 ctttatttccttaatatttattgttatttcatatcttgacataagaactattctacaagg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctttatttccttaatatttattgttatttcatatcttgacataagaactattctacaagg 443
Query: 244 gctttgataaatatagtgatgctaaacaaccattcagtgtgctccagtcaatttgcatct 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gctttgataaatatagtgatgctaaacaaccattcagtgtgctccagtcaatttgcatct 503
Query: 304 gtgctccttgtgatgaggctgcatttcgtgcactttcatatttcagagtgcggatgtcac 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gtgctccttgtgatgaggctgcatttcgtgcactttcatatttcagagtgcggatgtcac 563
Query: 364 atccatcaatagttgggaattatacactctatgaagcagagctctaacacacacaaatgc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 atccatcaatagttgggaattatacactctatgaagcagagctctaacacacacaaatgc 623
Query: 424 caaactggtgtgaaaaaaaatatgaattgaacagaaatgaagcaatctctaatgaacaag 483
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 caaactggtatgaaaaaaaatatgaattgaacagaaatgaagcaatctctaatgaacaag 683
Query: 484 cgaacatgacttgtttagcactgaaaaatcaatgagatgaacaagtctctcaccaagtga 543
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 684 cgaacatgacttgtttagcactgaaaaatcaatgagatgaacgagtctctcaccaagtga 743
Query: 544 atgaggtgaaaatcaacctaccattgaaccccgcaatctttcattttcattcccatccta 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 atgaggtgaaaatcaacctaccattgaaccccgcaatctttcattttcattcccatccta 803
Query: 604 cacagggtaccacgatgctaacactgcctgaatttgccattg 645
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 cacagggtaccacgatgctaacactgcctgaatttgccattg 845
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1046
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1036
Effective search space: 658896
Effective search space used: 658896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no368_j24.g1 MSMg01no368_j24.g1 CHROMAT_FILE:
MSMg01no368_j24.g1 PHD_FILE: MSMg01no368_j24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:07 2005
(558 letters)
>mm_chr8_51599640_51600597
Length = 958
Score = 1048 bits (542), Expect = 0.0
Identities = 554/558 (99%)
Strand = Plus / Minus
Query: 1 aaattgcttctcaacattcaatgcatactccagatcatttgaagcaaaatttgttatttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 853 aaattgcttctcaacattcaatgcatactccagatcatttgaagcaaaatttgttatttt 794
Query: 61 tataaacatctagcttttcaaaactttaaaacacaccctaaattacagttattgtttgta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 tataaacatctagcttttcaaaactttaaaacacaccctaaattacagttattgtttgta 734
Query: 121 atcatcatttgagtgattttatcatttattactctagttatatttttattgctttgtttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 atcatcatttgagtgattttatcatttattactctagttatatttttattgctttgtttt 674
Query: 181 acagcagaggacagagtataaaaatttaaattgtaaaataataaaactgtcatgcaggct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 acagcagaggacagagtataaaaatttaaattgtaaaataataaaactgtcatgcaggct 614
Query: 241 taatacagtggcattattcaattgaggtatactatctagggttaaaatttttagaattca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 taatacagtggcattattcaattgaggtatactatctagggttaaaatttttagaattca 554
Query: 301 attccttagtattaggttatctttttgatatcattttattgtatgtacatgagcaatata 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 attccttagtattaggttatctttttgatatcattttattgtatgtacatgagcaatata 494
Query: 361 ttttcttaatttttatttttagcaatctggttatttgtttctctgtggcaatttgttttt 420
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 493 ttttcttaatttttatttttaggaatctggttatttgtttctctgtggcaatttgttttt 434
Query: 421 cttctccatttatctatctatttatttatttgtttgttttacatcctgattgatcatagg 480
||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 433 cttctccatttatctatctatttatttatttattcattttacatcctgattgatcatagg 374
Query: 481 tccttgtcctctcagccccgccttgcataggtgtcctccgcccccaccccctgccattat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 tccttgtcctctcagccccgccttgcataggtgtcctccgcccccaccccctgccattat 314
Query: 541 tcctcccctcacttttcc 558
||||||||||||||||||
Sbjct: 313 tcctcccctcacttttcc 296
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 958
Length adjustment: 10
Effective length of query: 548
Effective length of database: 948
Effective search space: 519504
Effective search space used: 519504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
