BAC Information

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BAC

Clone NameMSMg01-368P12
Chromosome8 (Build37)
Map Location 58,907,916 - 58,908,304
singlet/doubletsinglet
Overlap genenone
Upstream geneGm392, LOC100040212, Gm1153, EG664808, EG664818, EG664834, EG664859, EG664876, LOC100040356, LOC664916, Adam29, Glra3, LOC664812, Hpgd
Downstream geneLOC664948, BC088983, Fbxo8, LOC100040431, EG624433, LOC654355, LOC100040515, Hand2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-368P12.T7 (MSMg01no368_p12.b1)MSMg01-368P12.TJ (MSMg01no368_p12.g1)
ACCAG476069AG476070
length780718
length of high quality
(start - end)
85 (96 - 180)436 (68 - 503)
definitionCHROMAT_FILE: MSMg01no368_p12.b1 PHD_FILE: MSMg01no368_p12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:34 2005CHROMAT_FILE: MSMg01no368_p12.g1 PHD_FILE: MSMg01no368_p12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTATTTTCCATAGGAGAGAAAAAAAAGCAGCCTTTTGAAATGGG
ATTAATTATCCTCACTCTCCCTGGCTATGAGTCTGCCCCATGGTGGTAAG
TGTGCCTTCTCGATGGCAGTAGACAACAATAGCAGTGAACTGCAGTTGAA
TTCCAGTATGCTCTTCTGGGACACTCAAAGCTCATGTCTTCCTCATCAAT
AAATGGAGAAATTGCTTGTGTGACATTAAAGAAGATTGTGGACCATCACT
AACTCGTGGGAAGAATGGGTTTTTGTTACAGAAGAGATGAAGCTTACTGT
GGTATTCTGGAGTTCTTTCCCTGCGTATCTTATCTGGTTTGTTGACAAGG
ATCTCTGTTCATGTAGACATTTTCTATACTTTTGATGGATAGTATCACAG
TCTCTTTTGACCCATCTGTATAGTTCATCCATGCTAGTTTGTTGTCTTGT
TCCCTGTATGATCCATGCCTTGACTACAGTATTATGGGGATACTCATCCT
TAGTCCAAGGTTGTATCTTTTATCGAATTAATTCCTGGTTTATGATTTTT
TGTTTTATTTGATATTCCTTGTACTTAGTAATCTTAAGTACCACCCTTTT
CCAGTGGCTGTATTTTACTTTTCCTTTTTGTGCATTTATTTCCTAGGTGT
TTTACTGCGGAGTTTCTTTCCTTCCCTCGTCCATTTGTTTTCTCGTTGTC
TTTTTTTTTCTCCCTTATTTGGCCCTCCAA
GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTACCCCATTTTTAATAGGG
TTATTTGATTTTCTGGAGTCCAACTTCTTGAGTTCCATATATATATTGGA
TATTAGACCTCTTTCGGATTTAGGATTGGTAAATATCCCTTCTCAATCTG
TCTTACTGACAGGGTATTTTGCCTTACAGAAGCTTTGCAATTTTATGAGG
TCCCATTTGTTGATTCTCGATATTATAGCCATTGCTAAAACAGCAGTATC
ATTTGCAACATAAAAACAGATACTCTTAATTTGTTTTAGTCTATAATAAA
TATAGTTTGGGCTTAAGTATCTCTTCATACTTCTGAGAAACCCATAATTT
CATAAAATCAAATGTTTTTTTCTTTCTATTCTTATTTTTATTAATTGGCT
ATTTTATTTATTTATATTTCATATGTTGTCCCCCTTCCCAGTCTCCCCTG
TGCAAACCCCCATCACACCTGCTTCTCCTTTGCCTCTAAGAATGTACTCT
TTCACTCCACTACCCCACTCCTGTCCCATTGCTGTAGTATCCCTTCACTG
GAACAATGGCCTCCTCTCCCATTGAAGCCCGATAAGGCCATTCCCTTCTG
GTACATATGAAGCTGGAACCAGGAACCCATTCACGAATACTCCTTGGTTG
GGGGATTTCACTCCTTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no368_p12.g1 MSMg01no368_p12.g1 CHROMAT_FILE:
MSMg01no368_p12.g1 PHD_FILE: MSMg01no368_p12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:34 2005
         (436 letters)



>mm_chr8_58907584_58908419
          Length = 836

 Score =  737 bits (381), Expect = 0.0
 Identities = 387/389 (99%)
 Strand = Plus / Minus

                                                                       
Query: 48  ggagtccaacttcttgagttccatatatatattggatattagacctctttcggatttagg 107
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ggagtccaacttcttgagttccatatatatattggatattagacctctttcggatttagg 662

                                                                       
Query: 108 attggtaaatatcccttctcaatctgtcttactgacagggtattttgccttacagaagct 167
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 661 attggtaaatatcccttctcaatctgtcttactgacagggtattttgccttatagaagct 602

                                                                       
Query: 168 ttgcaattttatgaggtcccatttgttgattctcgatattatagccattgctaaaacagc 227
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgcaattttatgaggtcccatttgttgattctcgatattatagccattgctaaaacagc 542

                                                                       
Query: 228 agtatcatttgcaacataaaaacagatactcttaatttgttttagtctataataaatata 287
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 agtatcatttgcaacataaaaacagatactcttaatttgttttagtctataataaatata 482

                                                                       
Query: 288 gtttgggcttaagtatctcttcatacttctgagaaacccataatttcataaaatcaaatg 347
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gtttgggcttaagtatctcttcatacttctgagaaacccataatttcataaaatcaaatg 422

                                                                       
Query: 348 tttttttctttctattcttatttttattaattggctattttatttatttatatttcatat 407
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 421 tttttttctttctattcttatttttattaattggttattttatttatttatatttcatat 362

                                        
Query: 408 gttgtcccccttcccagtctcccctgtgc 436
           |||||||||||||||||||||||||||||
Sbjct: 361 gttgtcccccttcccagtctcccctgtgc 333


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 836
Length adjustment: 9
Effective length of query: 427
Effective length of database: 827
Effective search space:   353129
Effective search space used:   353129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)