BAC Information

Click to search

BAC

Clone NameMSMg01-369G24
Chromosome8 (Build37)
Map Location 91,758,963 - 91,759,191
singlet/doubletsinglet
Overlap genenone
Upstream genePapd5, Adcy7, Brd7, LOC100040369, Nkd1, 9130017C17Rik, Nod2, Cyld, LOC675985, Sall1, LOC100041089, EG625801, EG384862
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-369G24.T7 (MSMg01no369_g24.b1)MSMg01-369G24.TJ (MSMg01no369_g24.g1)
ACCAG476424AG476425
length781767
length of high quality
(start - end)
332 (44 - 375)230 (74 - 303)
definitionCHROMAT_FILE: MSMg01no369_g24.b1 PHD_FILE: MSMg01no369_g24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:09 2005CHROMAT_FILE: MSMg01no369_g24.g1 PHD_FILE: MSMg01no369_g24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTCCCCCTCCCTTGTTTGCTTGGTTTTGTTTACTGTCCTTTTGTTC
AAGCTTTTGTTGAAACTTTAATTTTTTATATTTTAGGATTTATAAAGTTC
ATAGAGTGTGATTTTAAAAGGATGTAATTTGCTATAACACCATGTTTGTG
ACTTGGATTCAGCTTGGTGTAGGAAAGAACGTGTTCCTAATGGGTTAACA
TCAGATTACCATGTCATTTGCTGCCATCTTGGTTGATGACATGACCTAGG
CTCACCTTGGAGTAAGCATGTGGCTCATTGGGGCACCATCTTGGAAGCCA
TGTGATCCAGACACCATCTTTACTAAGGTTAAAGAAAGGACATGTCATGT
GACATCACCTCTTGGCTAAAGTGACCTTGTGAAATAAATGAATTAAAATA
GCTTGCTTATAACAGTTTCACCCACTAAGTTCTCTGCTTTATGTTGCCCC
CCCCTTTCATGAAAATGATGATGTATTCCCTCGGTTTTCACTCCGTTTTT
GGTTTATATTGCTTTTTTATCACTACTTTGCCTATATTATTTCCCTCTCA
CCTCTTTCTGCCTTTTCTTTTGTTCTTTTCCCTCAATTTACGTTTTTTTC
TCCGTTTCCGTGTCTTGTTTCTCTTTCCAATTTTTTTCTATCTCTTTCTC
TTTTTATTATTATTTTCTCCTCGATATTTTATCCTCCCTTCTCCCCCTCT
CTCCTCGCTTTTTTTTTTTTTTCCCCCCCCT
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTTCTGGTTACTCTGCTGCATGAGAC
ATGACTCAACCCTTAGAGACTTAAAAACATAAGTTTTTAGTTTTCTCCTG
ATTTCTTTTGGGGATGGGTTCCCAGGGATGATACCTAAGATCTATGCGTG
CTAGGACTTGCTCTACCCCTGGCTTACATCTCCTGTGCTCTGGATTCGGG
TTTTTTGTTTTTGTTTTTGTTTTTTTGGNTTTTTTTTTTTTTTTTTTTTT
TTTGGGNNTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAA
CCCACTTTGTATACCAGGCTGGCCTCGAGGGTCGAAATCCCCCTGCCTCT
GCTCTGGATCCCTTAAGCTACATATTTGGGGCGATTTATAGCTTCCACCC
AACCCTACGGACCGGGCGAAGTTACCTCGAGGTGCTCCCTACTGGAGCCC
TGCCCCCCCCGCCGTTGTTGGCGCTCTTGCCCCAACCCGTCTTTTCTCTC
CCCCGCCCCTCCCAATCTCCCGCCCCTTTCCCCACATCCCCCCGGGTGCT
TCTGCCCTTCTCCCCGCACCGGTGCTCCCCCCCTATCCTCTCCTCTCTCT
CCCCCTCCTCCCCCTCAGTTTATATCAACCCACTTTCTTTTTCCTCCTCT
TTCTTCTCTCCCCTTTTTTTCCCCCTCCCCTTTCTCCCCCCCCCTCCCCT
CCCCCTTTCTCCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no369_g24.g1 MSMg01no369_g24.g1 CHROMAT_FILE:
MSMg01no369_g24.g1 PHD_FILE: MSMg01no369_g24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:10 2005
         (230 letters)



>mm_chr8_91758815_91759444
          Length = 630

 Score =  437 bits (226), Expect = e-127
 Identities = 229/230 (99%), Gaps = 1/230 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttctggttactctgctgcatgagacatgactcaacccttagagacttaaaaacataag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tcttctggttactctgctgcatgagacatgactcaacccttagagacttaaaaacataag 318

                                                                       
Query: 61  tttttagttttctcctgatttcttttggggatgggttcccagggatgatacctaagatct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tttttagttttctcctgatttcttttggggatgggttcccagggatgatacctaagatct 258

                                                                       
Query: 121 atgcgtgctaggacttgctctacccctggcttacatctcctgtgctctggattcgggttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 atgcgtgctaggacttgctctacccctggcttacatctcctgtgctctggattcgggttt 198

                                                             
Query: 181 tttgtttttgtttttgtttttttggntttttttttttttttttttttttt 230
           ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 197 tttgtttttgtttttgtttttttgg-tttttttttttttttttttttttt 149


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 230
Length of database: 630
Length adjustment: 9
Effective length of query: 221
Effective length of database: 621
Effective search space:   137241
Effective search space used:   137241
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)