BAC Information

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BAC

Clone NameMSMg01-370L14
Chromosome8 (Build37)
Map Location 62,612,624 - 62,613,002
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC436042
Downstream geneAadat, Mfap3l, LOC100040679, 2700029M09Rik, Clcn3, B230317F23Rik, Nek1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-370L14.T7 (MSMg01no370_l14.b1)MSMg01-370L14.TJ (MSMg01no370_l14.g1)
ACCAG477404AG477405
length782788
length of high quality
(start - end)		465 (39 - 503)380 (70 - 449)
definitionCHROMAT_FILE: MSMg01no370_l14.b1 PHD_FILE: MSMg01no370_l14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:08:52 2005CHROMAT_FILE: MSMg01no370_l14.g1 PHD_FILE: MSMg01no370_l14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:08:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAT
CATCTGATTCAGAGCTACCAAGAGCTGGCTCCCCGAGCCCATCCAGCGAT
GAGCACAGGCTCCTTTTCCTAGAGACCTCCGCTAATTGATCTTTCTTCTT
TTCCCTTTTTCCTCTTTTTCTTCTAATCTCTCTCCAGGTATTCCTACCTA
ACCTTAACTTTTCCTCGGGTTCAAGACCCTTGGAAAGGACTGTATACTTA
TTTTGTGTACCATATTTCCTCTTTGTTCCTACTCTCTCTCCCCACTTTAC
TTCTGATAGCTTGTCCTGAATTTCCTCTAGAATTTTCAGCCCTATCTTAA
TCACTTGATAACATGTGAAAAGGAACAAAAGGGCTCCTAACACCAGAAAA
AATTCAAGGCCAAACATATTCCACTTTACTTCTGATAGACTGTCTTGAAT
TTCCTTAGAAAGTTCAAGACCAGACTTACCTCGTAAAGCTGTACTCACTG
GTACTCTCGTTCCCCAGCTGAAAAGTTCTGAATTCATACAGTTGAATCCT
TTCTAACAGCCTGCTTTACGGGAACCTTTTTTACCGCGACCCCCCATTCT
GGTTTTTGGAAAGAAGGAATCTTCCTGTGGCGGTCCCGAATTTTTTTTCT
ACCGCTATTTTTTCCCTTATTGTATATATAATTTTTCTCCTCCTTGCCTT
TATAGATTTTTCACCCGAACTTCTTCGCCCGCGTGCTCTTTTTTTCTACT
TTCCCCTTTGCACTCCTCCTACATTCCATTTT

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCTTCAATTTCACAAATTAAGAATGCTGAAA
AGAAATCTAATTAGTTCAGAATTGGATTGGTGTAATGAAACGCAGGTCAA
AAGGACAGTCATGGTCTTTTTTAAAAAAAAACTTGATTTCTATGATGAAA
TAAAGCTAGGATGGACAGAAATTTTAATGGTCATTTTCTGGAAACAAAGC
TTCAGATGTCACAACCTTTCAAGAAAAATTTGGTACTCCAGGTACATAAT
AAATCCTAAACATCTTTCTGATATAGATTTTTATTATTACTTTGTAGGTA
GCCTAGCATCACCTAGTCACTGATTTAGGAATATTTTATAGAGTCAGCAT
AAGTAGCATTTATATGCATTAAAATAGGTTATTTTTGGTTAGTTTTCTAA
ACAAGTGTGTGCTTTAATAGTAATGTGATTGACTTATGTCTCTCTGCCGG
CTATGAGGTACACCTTTTAATTAAAACTATGAACCCTGTGTCGTTGTTCA
CACCCCCCCTCTTGAAATTCGGGCCTAACCCCATTCTCCTCCGTAACACT
TAGCCTCCCTAATTCTTGTAACGACTCTCCCGTTCTTTTTACGCGTCCCC
CCTCTGCCCAGCTCCTTTTTCTTTTTCCTGTTTTCCAGTTATTCTTTTAC
TCTTCCTTTGTTTCTCCCCTCCTCTACCCTTTTTTCTTTCTCTTTTATCT
TTATCCATTCCTTATTTAATTTCTTTCTTCCCTCTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no370_l14.g1 MSMg01no370_l14.g1 CHROMAT_FILE:
MSMg01no370_l14.g1 PHD_FILE: MSMg01no370_l14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:08:52 2005
         (380 letters)



>mm_chr8_62612424_62613202
          Length = 779

 Score =  719 bits (372), Expect = 0.0
 Identities = 378/380 (99%), Gaps = 1/380 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttcaatttcacaaattaagaatgctgaaaagaaatctaattagttcagaattggattg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 tcttcaatttcacaaattaagaatgctgaaaagaaatctaattagttcagaattggattg 520

                                                                       
Query: 61  gtgtaatgaaacgcaggtcaaaaggacagtcatggtcttttttaaaaaaaaacttgattt 120
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 519 gtgtaatgaaacgcaggtcaaaaggacagtcatggtc-tttttaaaaaaaaacttgattt 461

                                                                       
Query: 121 ctatgatgaaataaagctaggatggacagaaattttaatggtcattttctggaaacaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 ctatgatgaaataaagctaggatggacagaaattttaatggtcattttctggaaacaaag 401

                                                                       
Query: 181 cttcagatgtcacaacctttcaagaaaaatttggtactccaggtacataataaatcctaa 240
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 400 cttcagatgtcacaaccttttaagaaaaatttggtactccaggtacataataaatcctaa 341

                                                                       
Query: 241 acatctttctgatatagatttttattattactttgtaggtagcctagcatcacctagtca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 acatctttctgatatagatttttattattactttgtaggtagcctagcatcacctagtca 281

                                                                       
Query: 301 ctgatttaggaatattttatagagtcagcataagtagcatttatatgcattaaaataggt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 ctgatttaggaatattttatagagtcagcataagtagcatttatatgcattaaaataggt 221

                               
Query: 361 tatttttggttagttttcta 380
           ||||||||||||||||||||
Sbjct: 220 tatttttggttagttttcta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 779
Length adjustment: 9
Effective length of query: 371
Effective length of database: 770
Effective search space:   285670
Effective search space used:   285670
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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