Query= MSMg01no370_n04.b1 MSMg01no370_n04.b1 CHROMAT_FILE:
MSMg01no370_n04.b1 PHD_FILE: MSMg01no370_n04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:08:59 2005
(504 letters)
>mm_chr8_120635181_120636092
Length = 912
Score = 737 bits (381), Expect = 0.0
Identities = 415/431 (96%), Gaps = 11/431 (2%)
Strand = Plus / Minus
Query: 83 ggatcactggtgagccttccaattctggattgtagttcattccagatatagtcaagttga 142
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 912 ggatcactggagagccttccaattctggattgtagttcattccagatatagtcaagttga 853
Query: 143 caaccaggaatagccactacatctggtaaaggtgcttgctgccatgcttggtgttcaatc 202
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 852 caaccaggaatagccactacatctggtaaaggtgcttgc-gccatgcttggtgttcaatc 794
Query: 203 cctatga-cctgcacactaaaaatagacaagtaactctaacaagttgtcctctgacctct 261
||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 793 cctatgaccct-cacactaaaaatagacaagtaactctaacaagttgtcctctggcctct 735
Query: 262 ccacacgtgccctggcacacacatgtacccctctacatatcatgcacatgcatgcacaca 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 ccacacgtgccctggcacacacatgtacccctctacatatcatgcacatgcatgcacaca 675
Query: 322 --------caatcaatcaatcaatgtttacagagggacatgtatgacatagaaaacacca 373
|||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct: 674 caatcaatcaatcaatcaatcaatgtttacagagggacatgtatgacagagaaaacagca 615
Query: 374 ttcaagatgaggttcagaaacccatttcttacaagaggtggtcctccctagctgtgacct 433
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 614 ttcaagatgaggttcagaaacccatttcttacaagaggaggtcctccctagctgtgacct 555
Query: 434 accactgtaaatggatgggatcggaataacttgagcatggcaaacaatcaacaaaactga 493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 accactgtaaatggatgggatcggaataacttgagcatggcaaacaatcaacaaaactga 495
Query: 494 ctttataatca 504
|||||||||||
Sbjct: 494 ctttataatca 484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 912
Length adjustment: 10
Effective length of query: 494
Effective length of database: 902
Effective search space: 445588
Effective search space used: 445588
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no370_n04.g1 MSMg01no370_n04.g1 CHROMAT_FILE:
MSMg01no370_n04.g1 PHD_FILE: MSMg01no370_n04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:08:59 2005
(309 letters)
>mm_chr8_120458927_120459635
Length = 709
Score = 598 bits (309), Expect = e-175
Identities = 309/309 (100%)
Strand = Plus / Plus
Query: 1 cagggtctatttattaacaagcatgggtttcgacagattttcatgttcttctttttttgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagggtctatttattaacaagcatgggtttcgacagattttcatgttcttctttttttgg 260
Query: 61 cagggcgtacagggatcgcctgccagtttctgacagccttgtcacactaggtgttaagtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagggcgtacagggatcgcctgccagtttctgacagccttgtcacactaggtgttaagtg 320
Query: 121 aaaaacatcatcagcctggtctattgataggttcaagtgacagcgtgtgttgccaatctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaaacatcatcagcctggtctattgataggttcaagtgacagcgtgtgttgccaatctc 380
Query: 181 agccaagaatcacttctgacaatttttctttccatccctgagcctgggcaagaatgtcgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agccaagaatcacttctgacaatttttctttccatccctgagcctgggcaagaatgtcgc 440
Query: 241 cccatctccttttcttaggagttgaaactgtagccatattaagactctgtgtgtgtgtgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cccatctccttttcttaggagttgaaactgtagccatattaagactctgtgtgtgtgtgt 500
Query: 301 gtgtgtgtg 309
|||||||||
Sbjct: 501 gtgtgtgtg 509
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 709
Length adjustment: 9
Effective length of query: 300
Effective length of database: 700
Effective search space: 210000
Effective search space used: 210000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
