BAC Information

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BAC

Clone NameMSMg01-370N14
Chromosome8 (Build37)
Map Location 93,757,403 - 93,757,809
singlet/doubletsinglet
Overlap geneRpgrip1l
Upstream geneTox3, LOC100041133, Chd9, LOC100041156, EG626231, Rbl2, Aktip, LOC667162, LOC100041222
Downstream geneAJ237917, LOC100041254, LOC674324, LOC100040628, Irx3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-370N14.T7 (MSMg01no370_n14.b1)MSMg01-370N14.TJ (MSMg01no370_n14.g1)
ACCAG477497AG477498
length7731,282
length of high quality
(start - end)
411 (37 - 447)---
definitionCHROMAT_FILE: MSMg01no370_n14.b1 PHD_FILE: MSMg01no370_n14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:01 2005CHROMAT_FILE: MSMg01no370_n14.g1 PHD_FILE: MSMg01no370_n14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTAC
CACCTGCTCACAAAACAAGTGTTATTTTCATGTTTTTCTAAATATTATTT
AAAGTTAATATGATTGACAGCATAGCTCCGATAGGAAAGAAGAATTTTCT
AAATTCTAAAGAAGAAAATTCTAAATAGTGAGAAACAAATTTAACTCAGG
AAATGTTGAAGTATGATCAAATATTGAAGTCAGTTGTCAATTGAAGTCAT
TCCTCAAGGAAGTCTCATGTTAATGTCTGAGGATTCTAGGAGAAAAATCA
AACAAATGTTATTTTAATTCTTCATTCTATAAATGTGAAATGGAAAATAA
ATTGCAAGAAATAATATGTAAGCTTAGACATAAGGTTCTGTTTCTTTTGC
TTGAAATGCTCCTTACTGAATGAAGTAAATTATGGCAGAAATATGAGAAT
GGGCTGCAGTTTCTGCTCCAGCTGCTATAGATTGATATAACTATATATAT
TAGCATAACAGTGCTTAAGTGCTCAATGGGCTTTGATCGCTGCATAACCG
AGCGTTCCCAGCTACTGTCGATTAATTTATGCCCCGTTAAACTTGGTCCT
TTTTTCCTAGTTTGAAATATGGCCAATTGACTCCCGGCTTTCCGTAAGTC
CTCCGATTTGTACAATCTCCTATTGCCCTCCCTTCCCATTAGTTCCCTTT
GGCGTATTTCTTATTCCCCCATGTTTTATCCTCTGTCGCTTCCCCCATTT
TATTCGTCACTTCCAGCACCTGG
GCGGCGTGATCATGTGTGGGTTGGACTAGGTGCGCGGCGATATCTCCTTG
CTGAGAACGCCACTAGCACGGAATCTGGGTGCAACTTCCTTTCCTTCGCC
CTCCTATGGTTGGCTGCCGCTCCCGTGCACAGCCGGTAGACCACGCTAGT
AGTCTGCACTTGCAGCGAGACATTTATTCTTGCGTTATACCTACACTCGT
CTTATCATTATTCTGCTGCGGCAAGATGGCTTCTCCTCGATGTTAACTCT
GTAGCTACCTAGATGATAGGCGTGGAGATGCGAGATGACGTCGCATCACG
CGTAATTCGACCGCCTGGTGCTGGCATTTCGTACCTGCATAGTCTATGCC
CAGCCGTTGCTCGACTCTCTGATCTTAACAAATGTGTACCTTGAGGCATG
CGCAATGGAGAGCGATTACACTCCTTGTTCGTGCATAGTGTATATAATCA
CTCATTGATCCCNGTTGTTTAGCGAGTCTATAAATTCGACTGCCGCCGTA
CGATACACTCGCTGGAGATTATTATTGTACTCAGGCGCATATTAAACGAT
ATTATGGTAATGAGCATAGTGTAAGACATAGTGAATGGTACCGTGTGATA
AGATATAATATATAGATTAGCGACTAGTAAACCAGGTATTCACTAGTTCT
GTTACATCCGCGGAATAAATGCCGCGTGAGTTACGATCCGGCGATAGGAG
ACGTCTGAGTACATATCGACGCCGTTTTTCTGGTATATTATATATATTCT
TTGCAGCGTGTAAAGCGATACAAGAGAGAATCGCGGAAGCGGTAATGGCT
TTGCGATTGTCGAGAAGATAGTTATACTATATAATGCGGTGCAGTGTGTT
NTAGACAATGATCGAACTGACGCATGATAATATATCTCGATATATTCTAT
GCAANGATCTTCGTCGTAGCGGCGCTNTGTATCACAGATACACGTCTTAT
ATCGACGCTTTCTCGCGTCACGCTGACACATCTATATGTCATAGTACTTA
CGCGCATCTACGCTGCGGTCGTAATATTTATACGCGCTGCACGACGGCCC
ACGACGTAAGCATCGCGAGCGTCACATTGNTAGAGTGTGTCCGTCCGGCG
GATTATAGAGAGCGACGTTTCGTCGGCTACGATCGCGTGTNTTGCGCTGT
NTTGTATATTATCGAGCGGTTATCTCTGGTGCGTCGTGATATCGCCGCAG
TACGTACGATATTACATTCATGTGAGAGCGCTTGACCTNGTTACACTGTA
TAATCGTGAGCGTGACTCGCGCATCGTGCGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no370_n14.b1 MSMg01no370_n14.b1 CHROMAT_FILE:
MSMg01no370_n14.b1 PHD_FILE: MSMg01no370_n14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:09:01 2005
         (411 letters)



>mm_chr8_93757199_93758009
          Length = 811

 Score =  779 bits (403), Expect = 0.0
 Identities = 406/407 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctaccacctgctcacaaaacaagtgttattttcatgtttttctaaatattattt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 gaattcctaccacctgctcacaaaacaagtgttattttcatgtttttctaaatattattt 552

                                                                       
Query: 65  aaagttaatatgattgacagcatagctccgataggaaagaagaattttctaaattctaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 aaagttaatatgattgacagcatagctccgataggaaagaagaattttctaaattctaaa 492

                                                                       
Query: 125 gaagaaaattctaaatagtgagaaacaaatttaactcaggaaatgttgaagtatgatcaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 gaagaaaattctaaatagtgagaaacaaatttaactcaggaaatgttgaagtatgatcaa 432

                                                                       
Query: 185 atattgaagtcagttgtcaattgaagtcattcctcaaggaagtctcatgttaatgtctga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 atattgaagtcagttgtcaattgaagtcattcctcaaggaagtctcatgttaatgtctga 372

                                                                       
Query: 245 ggattctaggagaaaaatcaaacaaatgttattttaattcttcattctataaatgtgaaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 ggattctaggagaaaaatcaaacaaatgttattttaattcttcattctataaatgtgaaa 312

                                                                       
Query: 305 tggaaaataaattgcaagaaataatatgtaagcttagacataaggttctgtttcttttgc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 tggaaaataaattgcaagaaataatatgtaagcttagacataaggttctgtttcttttgc 252

                                                          
Query: 365 ttgaaatgctccttactgaatgaagtaaattatggcagaaatatgag 411
           |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 251 ttgaaatgttccttactgaatgaagtaaattatggcagaaatatgag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 811
Length adjustment: 9
Effective length of query: 402
Effective length of database: 802
Effective search space:   322404
Effective search space used:   322404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)