Query= MSMg01no371_g19.b1 MSMg01no371_g19.b1 CHROMAT_FILE:
MSMg01no371_g19.b1 PHD_FILE: MSMg01no371_g19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:09:52 2005
(444 letters)
>mm_chr8_4353791_4354634
Length = 844
Score = 812 bits (420), Expect = 0.0
Identities = 439/446 (98%), Gaps = 2/446 (0%)
Strand = Plus / Minus
Query: 1 tggggccaggcagtggtggctcaccccttaatcccagcacttgggaggcagaggcaagcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 839 tggggccaggcagtggtggctcaccccttaatcccagcacttgggaggcagaggcaagcg 780
Query: 61 gatttctgagtttgaggccagcctggtctacagagtgagttccagtacagccagggctat 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 gatttctgagtttgaggccagcctggtctacagagtgagttccagtacagccagggctac 720
Query: 121 acagagaaaccctgtctcgc--aaaaaaaaaaaaaaaaaaaaaaaaaaaagaaaaagaag 178
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 719 acagagaaaccctgtctcgcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagaaaaagaag 660
Query: 179 agaaagaaaaagaaaccctgaataaaacaaccgtcataaacacaactgttgcaaactcat 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 agaaagaaaaagaaaccctgaataaaacaaccgtcataaacacaactgttgcaaactcat 600
Query: 239 ttgcatgcagcacacacacaccaaagacaaaatggaaggcctagagatgtatcttagtgg 298
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 599 ttgcatgtagcacacacacaccaaagacaaaatggaaggcctagagatgtatcttagttg 540
Query: 299 tagaacacttgcccagaatgctgaaggactcaatgcacaatgctaaaagggagaaaaagt 358
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 tagaacacttacccagaatgctgaaggactcaatgcacaatgctaaaagggagaaaaagt 480
Query: 359 aaaaagcataggaaatatataatcgctgtttttctccctgagatgttgacctgaggcctt 418
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 479 aaaaagcataggaaatatataatcgctgtttttctccctgagatgttggcctgaggcctt 420
Query: 419 acccacctgaggcgctcttccagtgg 444
||||||||||||||||||||||||||
Sbjct: 419 acccacctgaggcgctcttccagtgg 394
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 844
Length adjustment: 10
Effective length of query: 434
Effective length of database: 834
Effective search space: 361956
Effective search space used: 361956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no371_g19.g1 MSMg01no371_g19.g1 CHROMAT_FILE:
MSMg01no371_g19.g1 PHD_FILE: MSMg01no371_g19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:09:52 2005
(525 letters)
>mm_chr8_4183980_4184904
Length = 925
Score = 938 bits (485), Expect = 0.0
Identities = 512/521 (98%)
Strand = Plus / Plus
Query: 5 ggaattctaggcagatcctctactgcctaaccgcacttccagcccctcactgtgggattc 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggaattctaggcagaacctctactgcctaaccgcacttccagcccctcactgtgggattc 264
Query: 65 taggggatgctataccacagagtcatgctctcagcccctcaatgaggtattcgaggcagg 124
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tagggaatgctataccacagagtcatgctctcagcccctcaatgaggtattcgaggcagg 324
Query: 125 ggctctactaatccagcagatcgggagacactggccactaagaaaaaaggaattacttac 184
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggctctactaatccaacagatcgggagacactggccactaagaaaaaaggaattacttac 384
Query: 185 cgttcccaaaaggagaagaggcagacccgtcagtcaagaggcagacaagagcctgaggga 244
| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct: 385 cattcccaaaaggagaagaggcagacctgtcagtcaagaggcagacaagagcctggggga 444
Query: 245 aaaacactggcaagaacctttatattggttcccatgggcagcagtggatgaaacagggca 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaaacactggcaagaacctttatattggttcccatgggcagcagtggatgaaacagggca 504
Query: 305 agcaagcattcaagtcactgacttgaagcatttcagtctggccccagatgctgggtactc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agcaagcattcaagtcactgacttgaagcatttcagtctggccccagatgctgggtactc 564
Query: 365 agccctgaggtgatatgagcagatggatagtgagcatcgagtaaaagcttgatggaggaa 424
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 565 agccctgaggtgatatgagcagatggatagtgagcatcaagcaaaagcttgatggaggaa 624
Query: 425 gtggtcagggtgtgggctctggattggtttatttgaatatgggaaagttcactcacaggc 484
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 625 gtggtcagggtgtgggctctggattggtttatttgtatatgggaaagttcactcacaggc 684
Query: 485 agacagcccattcctatctttaataactgcctagccctagg 525
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 agacagcccattcctatctttaataactgcctagccctagg 725
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space: 471225
Effective search space used: 471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
