BAC Information

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BAC

Clone NameMSMg01-371H15
Chromosome8 (Build37)
Map Location 86,952,210 - 86,952,454
singlet/doubletsinglet
Overlap geneCacna1a
Upstream geneScoc, LOC546077, LOC675854, Olfr370, Ndufb7, Gpsn2, Dnajb1, Gipc1, Ptger1, Pkn1, Ddx39, Cd97, EG384857, Lphn1, Asf1b, Prkaca, Samd1, 1700067K01Rik, 2210011C24Rik, 4432412L15Rik, Il27ra, Rln3, C330011M18Rik, Rfx1, BC057552, LOC100039920, Podnl1, Cc2d1a, 4930432K21Rik, Nanos3, Zswim4, D8Ertd738e, 2410018C20Rik, Ccdc130
Downstream geneIer2, LOC100039975, Btbd14b, Trmt1, LOC100039997, Lyl1, Nfix, Dand5, Gadd45gip1, Rad23a, Calr, LOC546080, Farsa, Syce2, Gcdh, Klf1, Dnase2a, Mast1, Rtbdn, Rnaseh2a, LOC666841, Prdx2, Junb, Hook2, Best2, Asna1, 2310036O22Rik, Tnpo2, Fbxw9, EG436049, Dhps, 1500041N16Rik, BC056474, Man2b1, EG244556, EG624855, Olfr371, Vps35, Orc6l, D830007F02Rik, 4921524J17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-371H15.T7 (MSMg01no371_h15.b1)MSMg01-371H15.TJ (MSMg01no371_h15.g1)
ACCAG477975AG477976
length805870
length of high quality
(start - end)		---248 (45 - 292)
definitionCHROMAT_FILE: MSMg01no371_h15.b1 PHD_FILE: MSMg01no371_h15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:56 2005CHROMAT_FILE: MSMg01no371_h15.g1 PHD_FILE: MSMg01no371_h15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATGCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTCTTTCCTCAGCCTCCTGGGTGTGTGA
GACGCCTCATGCTGCTGANGCAGGCATTCCCAAAGCATCTCTCACAGAGC
TGGACCCACCCTTCCGACCCNNTCGTCCGGTTTTTCTTCCAAGTGGAGGG
ATGAGCCTTGNNTCTTCCCCCCCGCCCGGNNNNNNNNTCTTTCAGAAGCT
AAAGTCTCCCAACCCCGCAAGAATTTCCCCTTTTTGTGGGGGTGGGGNNN
NNNNNNNNNNNNANNNNNNNNNNNNNNNNNNTNNNNAANNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCNNNNCCNN
NCACNNNCNNNNCNNNNCNNNNNNNNNNNNCNNNNNNNNNNNNNNNNCCN
NCNNNNNNNNNCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCNNN
NNNNNNNNNCNCCCTCNNNCCNTTTTNCTNNNNNNNNNNNNNNNCNNCCN
NCCCCCNNCTTNNCCNCCNNCNNNCCCCCCNNNNATCNNNNNCNNNNNCN
CCNNNNCCCNNNNNNCNNNNNNCCTCCCNNNCCCCCCNNNNNCNNNCNNC
CCCCCTCNNNNNNTCCCNCCNNCNTTTCTCNNCNNNNTCTCCTNTNCTCT
TCCCNTCTTCTNNCCCTTTCNNCCTCNNTTTTCCCCNNTCCCNTCCCTTC
CCCTCCTTTNCCNCTCTNTCCCTTATCCTCCCTCACTATCCTTTTTCTAG
TTCTG

CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGGATCCGCGGA
ATTCCTTGGCTTTTGCTCTGTGGGTAGAATGGATGACATGAGGCGGTGAG
CCAGCTGGGACCATGTCTCCTTCAGGAGGACTAAGGAGATGCCTAGCAGC
CAGAACACACAGATTACAGAATCACAAGGGGCCTGGGAAGCATTGCGGCC
TGATCCCTGTTGTGTCTCTGGTCCTACGCTCCAATTCTGCCCCTTCATTC
CATACCATAGAGCCAGCTCATTTGCATAATGGTGCCCATTCCACCTGTGT
CACTCCCTACACGTTTCCATAGGTAGCTTCTCCCTAGGCCTCTAATTCAA
GAGGCCCAGTTTCTCCCTTTTTTGAAAACCTATGGGACCCTGGGGAAACC
TGGGGGCTTTTCCCCAGGCCAAAGAAACTTCCGAGAAATTTTGGGAGACC
CCCGGCCCAAAATTTTTTAGGGGAAAAAAAATCGTGGAGAAAAAACCCCC
GGGGCCCTTGTGGGAGACCACTCTAAAAACCACCTGGGGGGGGGCTGTGG
AGAAACCCCCCCCCCCTTTTTGTTGACTTCTCCCCCAAACCCTTTTCTTC
TCCCCCNCACTCCCTTTTTTCCCTTCTAACAATAAAATATATTATGTCCT
GTCTCCTCTTTTCCTTTTCTTTTCCGTTTCTCCTTTTCTTTTCATTGTCC
TTCTCTATCTCAGCTACATTCCCTTCTTTCCCTTCTATTATCTACTCACT
CTTTACTCTTACTTTGTGTACCTTTCTCTATACTTTCTCTCTTTTNNTTA
CATTACTCCCTATTCTNNNCNTNNNNTNCCTCNTTTCCCTTTTTCTCTCC
CCATTTATTTTCCTTTATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no371_h15.g1 MSMg01no371_h15.g1 CHROMAT_FILE:
MSMg01no371_h15.g1 PHD_FILE: MSMg01no371_h15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:09:56 2005
         (248 letters)



>mm_chr8_86952007_86952654
          Length = 648

 Score =  474 bits (245), Expect = e-138
 Identities = 245/245 (100%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccttggcttttgctctgtgggtagaatggatgacatgaggcggtgagccagctg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccttggcttttgctctgtgggtagaatggatgacatgaggcggtgagccagctg 263

                                                                       
Query: 64  ggaccatgtctccttcaggaggactaaggagatgcctagcagccagaacacacagattac 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ggaccatgtctccttcaggaggactaaggagatgcctagcagccagaacacacagattac 323

                                                                       
Query: 124 agaatcacaaggggcctgggaagcattgcggcctgatccctgttgtgtctctggtcctac 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agaatcacaaggggcctgggaagcattgcggcctgatccctgttgtgtctctggtcctac 383

                                                                       
Query: 184 gctccaattctgccccttcattccataccatagagccagctcatttgcataatggtgccc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gctccaattctgccccttcattccataccatagagccagctcatttgcataatggtgccc 443

                
Query: 244 attcc 248
           |||||
Sbjct: 444 attcc 448


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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