BAC Information

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BAC

Clone NameMSMg01-371J15
Chromosome8 (Build37)
Map Location 105,192,173 - 105,192,458
singlet/doubletsinglet
Overlap geneCdh11
Upstream genenone
Downstream geneEG667618, LOC100041368, 1600027J07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-371J15.T7 (MSMg01no371_j15.b1)MSMg01-371J15.TJ (MSMg01no371_j15.g1)
ACCAG478067AG478068
length747761
length of high quality
(start - end)		485 (78 - 562)517 (45 - 561)
definitionCHROMAT_FILE: MSMg01no371_j15.b1 PHD_FILE: MSMg01no371_j15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:10:06 2005CHROMAT_FILE: MSMg01no371_j15.g1 PHD_FILE: MSMg01no371_j15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:10:07 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGTTTAGCTATTTACCCCATT
TTTAAATTGATTTATGAGTTTCTAACTTCTTGTGTTCTTTATATATTTTG
GACTTTAGTTCTCTCTCAAGTGTAGGGTTGGTGGGTATCTTTTCCCAATA
TGTAGGCTTCCATTTTTTCCTATTGACAATGTCCTTTGTCTTGCAGAAGT
TTTTCAGTTTCATGAGTCCCTATGTTTCAAGTATTGATCTTAGAGCCTGA
GACATTGGTGTTCTGTTCAGAAAATTGTCTACTGAACCAATGTATCAAGG
ATATTTCCCACCTTGTCTCCTAGCAAATTTAGTGTATCTGGTTTAGTGGT
CTAGAGGTCTTTGGTGCCTGTGAACTCAAGTTTTGTGCTGGGGGATAAAT
ATAGGTCTATATGCATTCATCCTCTTGTAGACGTCCAGTTAGACCTGCAA
CATTTGTTGAAGATATTTTCTTTCTCTTTTTTCCATTGTATGACTTTTAT
GTCAAAATCAAGTGTTGGTGGGTGTGTGACTTATTTCTGGGTCTTCGATT
TGATTCCCCAGACCACTTGTTCATTTCCTTAGGTAAACCTGAGGGTTTTA
TCCTGATTGCTCTGGGGGACCCCCTGAGAACTGGTATGAAGAACTTTCCG
GCAATATTTTTTTATATTACGCCCCCGGCCTTTTTGGTTTCTAAAAA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCACCTGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAAATGCT
CAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTC
CACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAG
ATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGG
ATTGCAGGCTTGTACAACCACTCTGGAGATAAGTCATTTTAACATGGCAA
ACATAGCAGAAAGTGTTGAAGATAACACCTGTGTATTATCAAGCAAATAA
TAAAAATTACTTACAACATATTACTTTTTTTTTAACTCTGCATGCAAGTA
ACAATGTCTTCCCTCTCAGACACAAGAATCCTGAAGACTGAAATGACAAG
AGCCTATTGTATGATAAGTCATATCTGAATCTATACTTCAGGACTTCTAG
CAAAAAGCTTCAGAAATCAAGTCCTACATAAACTAGTAGAAACATCACTA
TGGGGTTGTAGAGATGGCTCAGCAGTTAAGAGCACTGACTGTTCTGCCAG
AGGTCCTGGGTTCAATTCCCAGCAACCACATGGTGGCTCACAATCATCTG
TAGTGGAATCCGATGCACTCGTCTAGGGGGTGCCCGAAAAAAGCTGCCAT
GTGTTCCTAAAAATAAAAACTAAAAAAATCTTTTTTAAAAAAAAAAAAAA
AAAAATCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no371_j15.g1 MSMg01no371_j15.g1 CHROMAT_FILE:
MSMg01no371_j15.g1 PHD_FILE: MSMg01no371_j15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:07 2005
         (517 letters)



>mm_chr8_105191744_105192661
          Length = 918

 Score =  397 bits (205), Expect = e-114
 Identities = 263/287 (91%), Gaps = 10/287 (3%)
 Strand = Plus / Plus

                                                                       
Query: 237 aagtcattttaacatggcaaacatagcagaaagtgttgaagataacacctgtgtattatc 296
           ||||||||||||||||||||||||| ||||||| |||||||||||||||| || ||||||
Sbjct: 430 aagtcattttaacatggcaaacataacagaaagcgttgaagataacacctatg-attatc 488

                                                                       
Query: 297 aagcaaataataaaaattacttacaacatatta--------ctttttttt-taactctgc 347
           |||||||||||||||||||||||||||||||||         |||||||| | |||||||
Sbjct: 489 aagcaaataataaaaattacttacaacatattaattagttgtttttttttctcactctgc 548

                                                                       
Query: 348 atgcaagtaacaatgtcttccctctcagacacaagaatcctgaagactgaaatgacaaga 407
           |||||||||||||||||||||||  |||| ||||||||||||||||||| ||||| ||||
Sbjct: 549 atgcaagtaacaatgtcttccctaacagagacaagaatcctgaagactggaatgataaga 608

                                                                       
Query: 408 gcctattgtatgataagtcatatctgaatctatacttcaggacttctagcaaaaagcttc 467
           ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 609 gcctattgtgtgataagtcatatctgaatctatacttcgggacttctagcaaaaagcttc 668

                                                          
Query: 468 agaaatcaagtcctacataaactagtagaaacatcactatggggttg 514
           ||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 669 agaaatcaagtcctaaatgaactagtagaaacatcactatggggttg 715


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 918
Length adjustment: 10
Effective length of query: 507
Effective length of database: 908
Effective search space:   460356
Effective search space used:   460356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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