BAC Information

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BAC

Clone NameMSMg01-371K15
Chromosome8 (Build37)
Map Location 23,137,769 - 23,138,297
singlet/doubletsinglet
Overlap geneAtp7b
Upstream geneDefcr21, LOC100038926, Defcr23, LOC100041688, Defcr25, LOC626605, LOC634825, LOC100040619, LOC100038927, Defcr22, Defcr-rs7, LOC100041759, LOC672740, EG665969, LOC100041787, Defcr3, Defcr5, LOC100041811, Defcr-rs1, LOC100040668, LOC100041843, LOC100040678, EG665927, LOC100040693, Defcr20, LOC100041890, LOC100041895, EG626682, LOC100040706, EG665956, LOC635093, Defcr26, Defcr17, LOC100041952, Defcr-ps1, AY761184, LOC100040729, Defcr24, LOC100040739, Defb1, Defb50, Defb2, Defb10, Defb9, Defb11, Defb15, Defb35, Defb13, C86695, Ccdc70
Downstream geneAlg11, Nek5, Nek3, Ckap2, Vps36, Rpl30-ps2, Thsd1, Tpte, Slc25a15, LOC547006, Mrps31, AI316807, Slc20a2, LOC100040803, Vdac3, Dkk4, Polb, Ikbkb, Plat, Ap3m2, Myst3, LOC100042253
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-371K15.T7 (MSMg01no371_k15.b1)MSMg01-371K15.TJ (MSMg01no371_k15.g1)
ACCAG478115AG478116
length766759
length of high quality
(start - end)		432 (82 - 513)544 (40 - 583)
definitionCHROMAT_FILE: MSMg01no371_k15.b1 PHD_FILE: MSMg01no371_k15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:10:12 2005CHROMAT_FILE: MSMg01no371_k15.g1 PHD_FILE: MSMg01no371_k15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:10:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGGTGCCTAACTAGAAACT
TCACCTCTTCTGACTGGAGTTTATGGTATTGTGCCCACCACTAGAGGAGA
ATCATTAGTTGTCAATATCTCCCAACTACAAACCCTCTGACCTACAACAG
CCACCTGCCTGCACTATATACTGGTGCATTGGCATAAATATTATGGGGGT
GACCAATCTCTTTTTGACTAGATTTAAGGCCCCTCCATGACATAGAACAC
ATATGTGACACTGATAAAGTGATCAAGAACCTAAGACTAGATAGATTATG
GGTCTTAGGGGAAAACCTATTATTCTGCTGAAGAAACCTAGCAATAGAAT
CATTTCTGATGAAATATTGCTGTGCCCAAGATCAGTGACTTGCTTGTTCC
CATCAGAGAATTAACAGAGGCTCACAACTGGGCAATGTGCAAAGAGTGAG
AGACATTGAAGCACTCAGCCTTAAGTGGATGTCATCATCAAATCTCTCCC
CTAGCCTTTCTCATTCCCTGGNCATCGTGGNAGCTGAATCTGGTTTGGGG
GTTGTCCCGAAAATAAAGGAGAAAAAAGTGGGTTGTCAAAAAAAGGAAAA
AAATCTTGGAATCAACATTTCTTGGGTCCCCGCTTGTTTTAAAAAAAATG
GAAAAAAACGGCTGGGGTTTGGGAAAAATCCTGAAAAATGTTCAAAAAGG
CCAAACCAAATTTGTG

CTATATTTGCGGCGCTAAACGACTCCTATAGTGAGAGGATCCGCGGAATT
CTCTCTAGATTACAACCCAAATCAGAGGAGTCTACCATTTGAGTGCCGCC
AGCCGTAGGAGAGGCAGCAACTGGAAATTCCATTTTCTCTATCCTGCTAA
CACATGAGCAGAGGTTACCAAGCTTTGCTATGACGTTCAACACGGGAGGC
AGAGCCCAGCTAGCCAACTACGCAAATCCTGTCATGAGACATCAAGAGAT
GACCCCGACATATTTCAAACATATAACAGTGACATACCAGAATTCACAGA
CACCTCAAATCCCATGTCTTCTACAGCCGTTCGGAGTTCGTCCAAGCTGA
CTATGGAGGGGTCGTAAAGAACTGCTCCAGTCCCTTCTGCCAAAGAGATG
GATGTTTGCTGCACACCTTTCCTCTGGGACAGCATGTCTTCGATAGGCTG
AACAGATGAGGCACAGGTAATGCCGCTGATGGTGAGCACCGCAGTCCTGC
CTGGGCCCTGCTCCTGGTGTCTCTGGGAGGAGCCACTTTGGGGCTCATTC
TCCTCTACTCCATCGGGAAGAGACACTTTAAAGTGCCCAGGTGGTAGTGC
CTCGATGGCTGTCTGTAGGAACATGGGGGTGACACAAGAAGGGGCATACT
GTACTTGGGCGGTTTTGTTCTCCACGGACCCCGAAAAATTTTGAACCCCC
GGGAATTGGGCCTAATTTCCTTTCATATATCAAAACCCTGGATTTTAGGG
GGATGGCGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no371_k15.g1 MSMg01no371_k15.g1 CHROMAT_FILE:
MSMg01no371_k15.g1 PHD_FILE: MSMg01no371_k15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:12 2005
         (544 letters)



>mm_chr8_23137554_23138497
          Length = 944

 Score =  915 bits (473), Expect = 0.0
 Identities = 518/539 (96%), Gaps = 11/539 (2%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattctctctagattacaa-cccaaatcagaggagtctaccatttgagtgccgccagcc 65
           ||||||||||||||  | || ||||||||||||||||||||||||||||||| ||| |||
Sbjct: 216 gaattctctctagaaaagaaacccaaatcagaggagtctaccatttgagtgctgccggcc 275

                                                                       
Query: 66  gtaggagaggcagcaactggaaattccattttctctatcctgctaacacatgagcagagg 125
            ||| |||||          ||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 atagaagagg----------aaattccattttctctatcctgctaacacatgagcagagg 325

                                                                       
Query: 126 ttaccaagctttgctatgacgttcaacacgggaggcagagcccagctagccaactacgca 185
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 326 ttaccaagctttgctatgacgttcaacacgggaggcagagcccagctatccaactacgca 385

                                                                       
Query: 186 aatcctgtcatgagacatcaagagatgaccccgacatatttcaaacatataacagtgaca 245
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 386 aatcctgtcatgagacatcaagagatgaccccgacatatttcaaacatataacaatgaca 445

                                                                       
Query: 246 taccagaattcacagacacctcaaatcccatgtcttctacagccgttcggagttcgtcca 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 taccagaattcacagacacctcaaatcccatgtcttctacagccgttcggagttcgtcca 505

                                                                       
Query: 306 agctgactatggaggggtcgtaaagaactgctccagtcccttctgccaaagagatggatg 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 agctgactatggaggggtcgtaaagaactgctccagtcccttctgccaaagagatggatg 565

                                                                       
Query: 366 tttgctgcacacctttcctctgggacagcatgtcttcgataggctgaacagatgaggcac 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 tttgctgcacacctttcctctgggacagcatgtcttcgataggctgaacagatgaggcac 625

                                                                       
Query: 426 aggtaatgccgctgatggtgagcaccgcagtcctgcctgggccctgctcctggtgtctct 485
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 626 aggtaatgccgctgatggtgagcaccgcagtcctgcccgggccctgctcctggtgtctct 685

                                                                      
Query: 486 gggaggagccactttggggctcattctcctctactccatcgggaagagacactttaaag 544
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 gggaggagccactttggggctcattctcctctactccatcgggaagagacactttaaag 744


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 944
Length adjustment: 10
Effective length of query: 534
Effective length of database: 934
Effective search space:   498756
Effective search space used:   498756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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