BAC Information

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BAC

Clone NameMSMg01-371M07
Chromosome8 (Build37)
Map Location 99,272,475 - 99,272,747
singlet/doubletsinglet
Overlap genenone
Upstream geneCnot1, LOC100041953, LOC100041088, BC031853, LOC100041972, Got2, LOC667445
Downstream geneLOC333331, LOC546090, LOC636859
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-371M07.T7 (MSMg01no371_m07.b1)MSMg01-371M07.TJ (MSMg01no371_m07.g1)
ACCAG478192AG478193
length754759
length of high quality
(start - end)
446 (77 - 522)278 (47 - 324)
definitionCHROMAT_FILE: MSMg01no371_m07.b1 PHD_FILE: MSMg01no371_m07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:10:20 2005CHROMAT_FILE: MSMg01no371_m07.g1 PHD_FILE: MSMg01no371_m07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:10:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCACAGAGTTAAAAAGGGCAATG
TGCAAATTCATCTGGAATAACAAAAAACCTTGGATAGCAAAAACTATTCT
CAACAATAAAAGAACTTCTGGGGGAAATCACAGTCCCTGACCTCAAGCTG
TACTACAGAGCAATTGTGATAAAAACTGCATGGTAATGGTACAGAGACAG
ACAGATAGATCAAAGGAATAGAACTGAAGGCCCAGAAATGAACTCACATA
CCTATGGTCACTTGATCTTTCACAAAGGAGCTAAAACCATCCAGTGGAAA
AATGACAGCATTTTCAACAAATGGTGCTGGCTCAACTGGCAGTTAGCATG
TAGAAGAATGCGAATTGATCCACCCTTATCTCCTTGTACAAAGCTCAAGT
CTAAGTGGATCAAGGACCTCCACATAAAACCAGAGTCACTGAAACTTATA
GAGGGGAAAGTGGGGAAGAGCCTCATAGATATGGGCACAGAGGAAAAATT
CCTGAACAGAACACCAATGGATTGTGCTGCACGATCAAGAATCAACAAAT
GAGACTTCATAAAGTTGGATAGCTTCTGTAAGGCAAAGGAATCTGTCCAT
AAGAAAAAAAAAGGCCCCAACAAATTGGGAAAAGGGGGCTATGGGTCTCA
AATCTGGAAAGAGGCCTTTTACCGAATAATTCACAAAAATCCAAAGATGG
GCCC
NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAATCCGC
GGAATTCAACCAACATTACAAGCATATGGTAATTAAAATGCTTTTTTAGA
GTGGGAGATTTAAACAAATGGCATCAATAACAATTGTGTCCTATTTTGTT
TTCAGTTTTATATCAAGGTCTGTGTCCTCTAGTCATTTATGAGTTTTATA
TGCTGTTACTACTTTAATAGCATATATTTTTTAGAGCACCTATCTGTTGA
CAGGGGATTTCTGGCAAGAAAGTAAGTTATTTCCTATTTGTTGAAGTTGA
TGATAGTGAATACTGCTATCAGTGCTGTTTTAGAGTTTTATCTCCTTTAA
AGAAAACATGGTGTTGGATTTATCAGACTCCAGTGCCTCAGGTTAATAAA
AAAATAAGTAACTGACCCAGTAGATATAGGTTAATGTGGATAGCATTACA
TAAGGATGACTACATAAAATTTGATAGGTCATTTAAATTCTGAATATTCT
GAGTGTAATCTAATAATAGGAAATGAGTTTGAAAGGTTCACATTTTATTA
TCGGTTTGCTCACACTGACACATATTGATTCCAACTTCATCACCCTGTGC
TGGCCTTTTTGATAAACTGCCTCGTCTTACGTTATCTCTCTACTTCCTGT
CCCACTTTACTTTACTGTAATTGCTTTTTTCTTAACTTGGTTACCTTGCA
AATCCTTTTTTTTATTCTCCCCTATCCACCTCTTCTAAATTTTTGCTTTT
AATTATCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no371_m07.g1 MSMg01no371_m07.g1 CHROMAT_FILE:
MSMg01no371_m07.g1 PHD_FILE: MSMg01no371_m07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:20 2005
         (278 letters)



>mm_chr8_99272270_99272947
          Length = 678

 Score =  505 bits (261), Expect = e-147
 Identities = 270/273 (98%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattcaaccaacattacaagcatatggtaattaaaatgcttttttagagtgggagattt 65
           ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 gaattcaaccaacatgataagcatatggtaattaaaatgcttttttagagtgggagattt 419

                                                                       
Query: 66  aaacaaatggcatcaataacaattgtgtcctattttgttttcagttttatatcaaggtct 125
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 aaacaaatggcatcaatagcaattgtgtcctattttgttttcagttttatatcaaggtct 359

                                                                       
Query: 126 gtgtcctctagtcatttatgagttttatatgctgttactactttaatagcatatattttt 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 gtgtcctctagtcatttatgagttttatatgctgttactactttaatagcatatattttt 299

                                                                       
Query: 186 tagagcacctatctgttgacaggggatttctggcaagaaagtaagttatttcctatttgt 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 tagagcacctatctgttgacaggggatttctggcaagaaagtaagttatttcctatttgt 239

                                            
Query: 246 tgaagttgatgatagtgaatactgctatcagtg 278
           |||||||||||||||||||||||||||||||||
Sbjct: 238 tgaagttgatgatagtgaatactgctatcagtg 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 678
Length adjustment: 9
Effective length of query: 269
Effective length of database: 669
Effective search space:   179961
Effective search space used:   179961
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)