BAC Information

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BAC

Clone NameMSMg01-372D09
Chromosome8 (Build37)
Map Location 59,819,465 - 59,819,704
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC664948, BC088983, Fbxo8, LOC100040431, EG624433, LOC654355, LOC100040515, Hand2
Downstream geneScrg1, Sap30, Hmgb2, LOC547012, Galnt7, LOC100040634, LOC100040711
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-372D09.T7 (MSMg01no372_d09.b1)MSMg01-372D09.TJ (MSMg01no372_d09.g1)
ACCAG478528AG478529
length744737
length of high quality
(start - end)
601 (41 - 641)240 (69 - 308)
definitionCHROMAT_FILE: MSMg01no372_d09.b1 PHD_FILE: MSMg01no372_d09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:10:54 2005CHROMAT_FILE: MSMg01no372_d09.g1 PHD_FILE: MSMg01no372_d09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:10:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TCAACTGACGAATACAGAAGGACTGAGAAGGACTTGAAAGAATGTTCAAC
ATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCTTGAGATTCCAAC
TCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGC
TGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGCTGATGGGATTG
CAAGCTTGTACAACCACTCTGGAAATCCATCTAGCAGTTCCTCAGAAAAT
TGGACATAGGACTACCAGAAGATCCAGCAATACCTCTCCTGGGCATATAC
CCAGAAGATGTTCCAACTGGTAATAAGGACACATACTCCACTATGTTCAT
AACAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGTCCCT
CAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATGGAGTAC
TACTCAGCTATTAAAAACAATGAATTTTTTTTCTTTCTTTCTTTCTTTTT
CTTTTTTTTTCCATTTTTTATTAGGTATTTAGCTCATTTACATTTCCAAT
GCTATACCAAAAGTCCCCCATACCCACCCACCCCCATTCCCCTACCCACC
CACTCCCCCTTTTTGGCCCTGGCGNTCCCCTGCCCTGGTGTCTATATAAA
TACTCCCGAGCTTTTGTAACTCCTTCGTCCCTGGGTTGTTTTTG
AAGTGGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTCCTGGAAAAGAGCGGAAGTAGAAACCCAGT
AGAATCCAGAGGAAGCTGCTTCTAGCAGCCCCCGGCTGAAGGCCAGGCCT
GTGTTCTTTTGGATGCCCATTTGACTCTGGACCAGGGCCTGGGGCTCTTT
TCCTTCTTTCTTCCTTTCTGCCCCGCCCCCTTTCACCCTGTTTCTCGCTT
CAGTTCATTCGTGTTTTTAAAATTTCATATGTAAGAACATTACAAAGAAA
GAGCAATTTCTCATTTAATAGTCGGTAGCAGCATAGGGGGAATTACAAAT
AGGATGGGGTTTAATTAGCTGGTAATACTCCTCTCATGCCCTATAATTAA
TCAGAGATTCATTCTAGTGGCGCTTCAGGGCCTATAAGTGATTATTACAA
GCATATTTTACGTTTACATTAAAACTCTGTTCCCGGAGTGTATTACGGGA
TCTGACTCCATTTATTCGCACTTCAGAACTGTATTACGGGGGCCAGAGCG
CGGCTTTTCCGAACTGGAACGCTGCCTCCTTGTCTGATTTAGATTTTCCC
CGCCCTGCCCTGTTGATTCTGATTGCCCCATCTATTCCTTTCCTCCAACC
TGAGTACCTACACCTTTCATTCCCTTATTGAAACCCACATCGCGTGTGCC
CCACTCTTTTGCTTGTTTGTCCCCTTCTTTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no372_d09.g1 MSMg01no372_d09.g1 CHROMAT_FILE:
MSMg01no372_d09.g1 PHD_FILE: MSMg01no372_d09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:54 2005
         (240 letters)



>mm_chr8_59819265_59819904
          Length = 640

 Score =  449 bits (232), Expect = e-131
 Identities = 238/240 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcctggaaaagagcggaagtagaaacccagtagaatccagaggaagctgcttctagcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 440 ctcctggaaaagagcggaagtagaaacccagtagaatccagaggaagctgcttctcgcag 381

                                                                       
Query: 61  cccccggctgaaggccaggcctgtgttcttttggatgcccatttgactctggaccagggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cccccggctgaaggccaggcctgtgttcttttggatgcccatttgactctggaccagggc 321

                                                                       
Query: 121 ctggggctcttttccttctttcttcctttctgccccgccccctttcaccctgtttctcgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ctggggctcttttccttctttcttcctttctgccccgccccctttcaccctgtttctcgc 261

                                                                       
Query: 181 ttcagttcattcgtgtttttaaaatttcatatgtaagaacattacaaagaaagagcaatt 240
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 260 ttcagttcattcgtgtttttaaaatttcatatgtaagaacattaaaaagaaagagcaatt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)